Ruprecht-Karls-Universit├Ąt Heidelberg
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Reinstein0118 - Scientist (f/m) / PhD position
Project no:
Reinstein0118

Project leader:

Project supervisor:
Reinstein, Jochen
Application deadline:
30. Jun 2018
Start of PhD project:
1. Aug 2018

Project description:

Title:
Assembly, DNA loading and processing of virophages
Summary:
Virophages are small DNA viruses that co-infect unicellular organisms that contain giant viruses. They recruit the cytosolic reproduction and assembly machinery of the giant virus whose own propagation is then stalled. Up to now 3 different virophages, namely Sputnik, Mavirus and Zamilon were isolated (1-3). They contain about 20 coding regions in a DNA genome of approx. 20 kb. The most conserved components are two capsid proteins, a protease that assists maturation and a FtsK-HerA type ATPase that supposedly is responsible for ATP dependent DNA transport into the assembled capsid.

The successful candidate will characterize and compare key features of Mavirus and Sputnik/Zamilon capsid assembly and processing and active transport of DNA. Common themes as well as unique features correlated to adaption of the different virophages to their different hosts/environment should be elucidated. The assembly/disassembly pathways will be characterized with spectroscopic, kinetic and structural methods with the aim to understand better the hierarchy and pathway of supramolecular organisation of capsid structure and what determines the exact size of the assembled particles in the absence of a molecular ruler. Key to address these questions is also development and application of mostly fluorescence based markers for FRET and ideally also Fluorescence Microscopy based assays.
References:
[1] Zhang X, Sun S, Xiang Y, Wong J, Klose T, Raoult D, et al. Structure of Sputnik, a virophage, at 3.5-A resolution. Proc Natl Acad Sci U S A. 2012;109:18431-6.

[2] Gaia M, Benamar S, Boughalmi M, Pagnier I, Croce O, Colson P, et al. Zamilon, a Novel Virophage with Mimiviridae Host Specificity. Plos One. 2014;9.

[3] Fischer MG, Suttle CA. A virophage at the origin of large DNA transposons. Science. 2011;332:231-4.

[4] Muller B, Anders M, Reinstein J. In vitro analysis of human immunodeficiency virus particle dissociation: gag proteolytic processing influences dissociation kinetics. PLoS One. 2014;9:e99504.

[5] Zeymer C, Fischer S, Reinstein J. trans-Acting arginine residues in the AAA+ chaperone ClpB allosterically regulate the activity through inter- and intradomain communication. J Biol Chem. 2014;289:32965-76.
Methods that will be used:
Protein Biochemistry+Biophysics, Spectroscopy, transient kinetics, EM
Cooperation partners:
Matthias Fischer, MPImR Heidelberg
Personal qualifications:
A strong interest in quantitative and analytical techniques and molecular mechanisms, solid training in molecular biology and biochemistry, knowledge in biophysics and physical chemistry.
Keywords:
Capsid, folding&assembly, DNA transport ATPase, structure, fluorescence