Ruprecht-Karls-Universität Heidelberg
HBIGS homepage | Forgot password

Publications by HBIGS PhD students:

Publications in 2011

Endris V, Haussmann L, Buss E, Bacon C, Bartsch D, Rappold G (2011) SrGAP3 interacts with lamellipodin at the cell membrane and regulates Rac-dependent cellular protrusions J Cell Sci, 124, 3941-55

Ghosh Dastidar M, Jouannet V, Maizel A (2011) Root branching: mechanisms, robustness and plasticity. Wiley Interdiscip Rev Dev Biol, 1, 3, 329-43

Radchenko E, Rogoza T, Khokhrina M, Drozdova P, Mironova L (2011) SUP35 expression is enhanced in yeast containing [ISP+] prion, a prion form of the transcriptional regulator Sfp1. Prion, 5, 4, 317-322

Cyrklaff M, Sanchez CP, Kilian N, Bisseye C, Simpore J, Frischknecht F, Lanzer M (2011) Hemoglobins S and C Interfere with Actin Remodeling in Plasmodium falciparum-Infected Erythrocytes. Science, 334, 6060, 1283-86

Leppek K, Schott J, Stoecklin G (2011) Protein synthesis and translational control: at eye level with the ribosome. EMBO Rep, 12, 1214-1216

Hotz-Wagenblatt A, Kats I, Glatting KH, Scharfenberger-Schmeer M, Haldemann B (2011) OnTarget: A tool for analysing enrichment data derived from next generation sequencing. Intelligent Systems Design and Applications (ISDA), 2011 11th International Conference on

Remke M, Hielscher T, Korshunov A, Northcott PA, Bender S, Kool M, Westermann F, Benner A, Cin H, Ryzhova M, Sturm D, Witt H, Haag D, Toedt G, Wittmann A, Schöttler A, von Bueren AO, von Deimling A, Rutkowski S, Scheurlen W, Kulozik AE, Taylor MD, Li (2011) FSTL5 Is a Marker of Poor Prognosis in Non-WNT/ Non-SHH Medulloblastoma. J Clin Oncol, doi: 10.1200/JCO.2011.36.2798

Schulmeister S, Grosse K, Sourjik V (2011) Effects of receptor modification and temperature on dynamics of sensory complexes in Escherichia coli chemotaxis. BMC Microbiol, 11, 1, 222

Raake PW, Tscheschner H, Reinkober J, Ritterhoff J, Katus HA, Koch WJ, Most P. (2011) Gene therapy targets in heart failure: the path to translation. Clin Pharmacol Ther, 90, 4, 542-53

Padovano V, Lucibello I, Alari V, Della Mina P, Crespi A, Ferrari I, Recagni M, Lattuada D, Righi M, Toniolo D, Villa A, Pietrini G (2011) The POF1B candidate gene for premature ovarian failure regulates epithelial polarity. J Cell Sci, 124, Pt 19, 3356-68

Palanisamy Navaneethan, Thiagarajan Kalaivani, Chandrasekaran Rajasekaran, Nautiyal Sunil. (2011) Nutritional status of children in rural India: a case study from Tamil Nadu, first in the world to initiate the Mid-Day Meal scheme Health 3(10): 647-655

Beck R, Prinz S, Diestelkötter-Bachert P, Röhling S, Adolf F, Hoehner K, Welsch S, Ronchi P, Brügger B, Briggs JA, Wieland F (2011) Coatomer and dimeric ADP ribosylation factor 1 promote distinct steps in membrane scission. J Cell Biol, 194, 5, 765-77.

Erdel F, Krug J, Längst G, Rippe K (2011) Targeting chromatin remodelers: signals and search mechanisms. Biochimica Biophysica Acta - Gene Regulatory Mechanisms doi:10.1016/j.bbagrm.2011.06.005

Engeland CE, Oberwinkler H, Schuemann M, Krause E, Müller GA, Kräusslich HG (2011) The cellular protein Lyric interacts with HIV-1 Gag. J Virol, 85, 24, 13322-32

Obernier K, Simeonova I, Fila T, Mandl C, Hölzl-Wenig G, Monaghan-Nichols P, Ciccolini F. (2011) Expression of Tlx in both stem cells and transit amplifying progenitors regulates stem cell activation and differentiation in the neonatal lateral subependymal zone. Stem Cells 29, 9, 1415-26

Younes BG, Hazzouri KM, Chaaban MJ, Karam WG, Abou Jaoude IF, Attieh JH, Hazzouri MM (2011) High frequency of sex chromosomal disomy in spermatozoa of Lebanese infertile men. J Androl, 32, 5, 518-23

Witt H, Mack SC, Ryzhova M, Bender S, Sill M, Isserlin R, Benner A, Hielscher T, Milde T, Remke M, Jones DT, Northcott PA, Garzia L, Bertrand KC, Wittmann A, Yao Y, Roberts SS, Massimi L, Van Meter T, Weiss WA, Gupta N, Grajkowska W, Lach B, Cho YJ, (2011) Delineation of two clinically and molecularly distinct subgroups of posterior fossa ependymoma. Cancer Cell, 20, 2, 143-57

Pfaffenhuber C, Soergel S, Weichert K, Bele M, Mundinger T, Goebel M, Maier J (2011) In Situ Recording of Particle Network Formation in Liquids by Ion Conductivity Measurements. J. Am. Chem. Soc, 110824145828013 (2011).doi:10.1021/ja205287d

Huang SH, Duan S, Sun T, Wang J, Zhao L, Geng Z, Yan J, Sun HJ, Chen ZY (2011) JIP3 mediates TrkB axonal anterograde transport and enhances BDNF signaling by directly bridging TrkB with kinesin-1. J Neurosci, 31, 29, 10602-14

Schmitz ML, Weber A, Roxlau T, Gaestel M, Kracht M. (2011) Signal integration, crosstalk mechanisms and networks in the function of inflammatory cytokines. Biochimica et Biophysica Acta, 1813(12):2165–2175

Cin H, Meyer C, Herr R, Janzarik WG, Lambert S, Jones DT, Jacob K, Benner A, Witt H, Remke M, Bender S, Falkenstein F, Van Anh TN, Olbrich H, von Deimling A, Pekrun A, Kulozik AE, Gnekow A, Scheurlen W, Witt O, Omran H, Jabado N, Collins VP, Brummer (2011) Oncogenic FAM131B-BRAF fusion resulting from 7q34 deletion comprises an alternative mechanism of MAPK pathway activation in pilocytic astrocytoma. Acta Neuropathol, 121, 6, 763-74

Meissner C, Lorenz H, Weihofen A, Selkoe DJ, Lemberg MK (2011) The mitochondrial intramembrane protease PARL cleaves human Pink1 to regulate Pink1 trafficking. J Neurochem, 117, 5, 856-867

Contreras FX, Ernst AM, Wieland F, Brügger B (2011) Specificity of intramembrane protein-lipid interactions. Cold Spring Harb Perspect Biol. 3, 6, pii: a004705. doi: 10.1101/cshperspect.a004705.

Benz C, Mulindwa J, Ouna B, Clayton C. (2011) The Trypanosoma brucei zinc finger protein ZC3H18 is involved in differentiation. Mol Biochem Parasitol, 177, 2, 148-151

Bierbach D, Girndt A, Hamfler S, Klein M, Mücksch F, Penshorn M, Schwinn M, Zimmer C, Schlupp I, Streit B, Plath M (2011) Male fish use prior knowledge about rivals to adjust their mate choice. Biol Lett, 7, 3, 349-51

Bertazzi DT, Kurtulmus B, Pereira G (2011) The cortical protein Lte1 promotes mitotic exit by inhibiting the spindle position checkpoint kinase Kin4. J Cell Biol, 193, 6, 1033-48

Cui Y, Jin J, Zhang X, Xu H, Yang L, Du D, Zeng Q, Tsien JZ, Yu H, Cao X (2011) Forebrain NR2B Overexpression Facilitating the Prefrontal Cortex Long-Term Potentiation and Enhancing Working Memory Function in Mice. Plos ONE, 6, 10, e20312

Lin TC, Gombos L, Neuner A, Sebastian D, Olsen JV, Hrle A, Benda C, Schiebel E (2011) Phosphorylation of the yeast γ-tubulin Tub4 regulates microtubule function. PLoS One, 6, 5, e19700.

Mongin E, Auer TO, Bourrat F, Gruhl F, Dewar K, Blanchette M, Wittbrodt J, Ettwiller L (2011) Combining computational prediction of cis-regulatory elements with a new enhancer assay to efficiently label neuronal structures in the medaka fish. PLoS One, 6, 5, e19747

Holenya P*, Kitanovic I*, Heigwer F, Wölfl, S (*equal contribution) (2011) Microarray-based kinetic colorimetric detection for quantitative multiplex protein phosphorylation analysis. Proteomics, 11, 10, 2129-33

Decker E, Durand C, Bender S, Rödelsperger C, Glaser A, Hecht J, Schneider KU, Rappold G. (2011) FGFR3 is a target of the homeobox transcription factor SHOX in limb development. Hum Mol Genet, 20, 5

Koos B, Bender S, Witt H, Mertsch S, Felsberg J, Beschorner R, Korshunov A, Riesmeier B, Pfister SM, Paulus W, Hasselblatt M (2011) The transcription factor Evi-1 is overexpressed, promotes proliferation and is prognostically unfavorable in infratentorial ependymomas. Clin Cancer Res, 17, 3631

Yeh CM, Liu YC, Chang CJ, Lai SL, Hsiao CD, Lee SJ (2011) Ptenb Mediates Gastrulation Cell Movements via Cdc42/AKT1 in Zebrafish. PLoS ONE 6, 4, e18702

Gallmeier E, Hermann PC, Mueller MT, Machado JG, Ziesch A, De Toni EN, Palagyi A, Eisen C, Ellwart JW, Rivera J, Rubio-Viqueira B, Hidalgo M, Bunz F, Göke B, Heeschen C (2011) Inhibition of ataxia telangiectasia- and Rad3-related function abrogates the in vitro and in vivo tumorigenicity of human colon cancer cells through depletion of the CD133(+) tumor-initiating cell fraction. Stem Cells, 29, 3, 418-29

Navaneethan P, Nautiyal Sunil, Kalaivani T, Rajasekaran C. (2011) Cross-cultural ethnobotany and conservation of medicinal and aromatic plants in the Nilgiris, Western Ghats: A case study Medicinal Plants - International Journal of Phytomedicines and Related Industries 3(1): 27-45

Rey G, Cesbron F, Rougemont J, Reinke H, Brunner M, Naef F (2011) Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver. PLoS Biol, 9, e1000595

Hernandez JA, Phillips AH, Erbil WK, Zhao D, Demuez M, Zeymer C, Pelton JG, Wemmer DE, Rubio LM (2011) A sterile alpha motif domain in NafY targets apo-NifDK for FeMo-cofactor delivery via a tethered domain. J Biol Chem 286, 8, 6321-28

Sedoud A, Kastner L, Cox N, El-Alaoui S, Kirilovsky D, Rutherford AW (2011) Effects of formate binding on the quinone-iron electron acceptor complex of photosystem II. Biochim Biophys Acta, 1807, 2, 216-26

Horn T, Sandmann T, Fischer B, Axelsson E, Huber W, Boutros M (2011) Mapping of Signalling Networks through Synthetic Genetic Interaction Analysis by RNAi. Nature Methods, doi:10.1038/nmeth.1581

Axelsson E, Sandmann T, Horn T, Boutros M, Huber W, Fischer B (2011) Extracting quantitative genetic interaction phenotypes from matrix combinatorial RNAi. BMC Bioinformatics, 12, 342

Kulozik P, Jones A, Mattijssen F, Rose AJ, Reimann A, Strzoda D, Kleinsorg S, Raupp C, Kleinschmidt J, Müller-Decker K, Wahli W, Sticht C, Gretz N, von Loeffelholz C, Stockmann M, Pfeiffer A, Stöhr S, Dallinga-Thie GM, Nawroth PP, Berriel Diaz M, Her (2011) Hepatic deficiency in transcriptional cofactor TBL1 promotes liver steatosis and hypertriglyceridemia. Cell Metab, 13, 4, 389-400.

Manful T, Fadda A, Clayton C. (2011) The role of the 5'-3' exoribonuclease XRNA in transcriptome-wide mRNA degradation. RNA, 17, 11, 2039-47

Böhm V, Hieb AR, Andrews AJ, Gansen A, Rocker A, Tóth K, Luger K, Langowski J. (2011) Nucleosome accessibility governed by the dimer/tetramer interface. Nucleic Acids Res, 39, 8, 3093-102

Keller PJ, Schmidt AD, Wittbrodt J, Stelzer EH (2011) Digital scanned laser light-sheet fluorescence microscopy (DSLM) of zebrafish and Drosophila embryonic development. Cold Spring Harb Protoc, 10, 1235-43

Sattler JM, Ganter M, Hliscs M, Matuschewski K, Schüler H (2011) Actin regulation in the malaria parasite. Eur J Cell Biol, 90, 11, 966-71

Singh BK*, Sattler JM*, Chatterjee M, Huttu J, Schüler H, Kursula I (*equal contribution) (2011) Crystal structures explain functional differences in the two actin depolymerization factors of the malaria parasite. J Biol Chem, 286, 32, 28256-64.

Just S*, Berger IM*, Meder B, Backs J, Keller A, Marquart S, Frese K, Patzel E, Rauch GJ; Tübingen 2000 Screen Consortium, Katus HA, Rottbauer W (*equal contribution) (2011) Protein Kinase D2 Controls Cardiac Valve Formation in Zebrafish by Regulating Histone Deacetylase 5 Activity. Circulation, 124, 324-34

Niopek D, Berrens R, Mockenhaupt S, Lewis MD, Mueller AK, Grimm D (2011) To go, or not to go, that is the question - six personal reflections on how geographic mobility may affect your career and life. Bioessays, 33, 10, 728-31

Feldner A*, Otto H*, Rewerk S, Hecker M, Korff T (*equal contribution) (2011) Experimental hypertension triggers varicosis-like maladaptive venous remodeling through activator protein-1. The FASEB Journal, 25, 10, 3613-3621

Serva A, Claas C, Starkuviene V (2011) A Potential of microRNAs for High-Content Screening J Nucleic Acids, 2011, 870903

Karagöz GE, Sinnige T, Hsieh TY, Rüdiger SG (2011) Expressed protein ligation for a large dimeric protein. Protein Eng Des Sel, 24, 6, 495-501

Cremer C, Kaufmann R, Gunkel M, Pres S, Weiland Y, Müller P, Ruckelshausen T, Lemmer P, Geiger F, Degenhard S, Wege C, Lemmermann NA, Holtappels R, Strickfaden H, Hausmann M. (2011) Superresolution imaging of biological nanostructures by spectral precision distance microscopy. Biotechnol J, 6, 9, 1037-51

Weiland Y, Lemmer P, Cremer C. (2011) Combining FISH with localisation microscopy: Super-resolution imaging of nuclear genome nanostructures. Chromosome Res, 19, 1, 5-23

Worst B, Jebessa Z, Heft C, Katus HA, Backs J (2011) PKA neutralisiert die CaMKII vermittelte Aktivierung MEF2-abhängiger - nicht jedoch SRF-abhängiger - Transkription Clin Res Cardiol, 100, Suppl 1

Specht S, Miller SBM, Mogk A, Bukau B (2011) Hsp42 is required for sequestration of protein aggregates into deposition sites in Saccharomyces cerevisiae. J Cell Biol, 195, 4, 617-29

Fischer S, Benz J, Späth B, Jellen-Ritter A, Heyer R, Doerr M, Maier LK, Menzel-Hobeck C, Lehr M, Jantzer K, Babski J, Soppa J, Marchfelder A. (2011) Regulatory RNAs in Haloferax volcanii. Biochem Soc Trans, 39, 1, 159-62

Centanin L, Höckendorf B, Wittbrodt J (2011) Fate restriction and multipotency in retinal stem cells. Cell Stem Cell, 9, 6, 553-62

Werbeck ND, Zeymer C, Kellner JN, Reinstein J (2011) Coupling of oligomerization and nucleotide binding in the AAA+ chaperone ClpB. Biochemistry 50, 5, 899–909

Chapman HN,....Rocker A,....Spence JCH (2011) Femtosecond X-ray protein nanocrystallography Nature, 470, 73–77

Mandery K, Sticht H, Bujok K, Schmidt I, Fahrmayr C, Balk B, Fromm MF, Glaeser H (2011) Functional and structural relevance of conserved positively charged lysine residues in organic anion transporting polypeptide 1B3. Mol Pharmacol, 80, 3, 400-6

Schliehe C, Redaelli C, Engelhardt S, Fehlings M, Mueller M, van Rooijen N, Thiry M, Hildner K, Weller H, Groettrup M. (2011) CD8- Dendritic Cells and Macrophages Cross-Present Poly(D,L-lactate-co-glycolate) Acid Microsphere-Encapsulated Antigen In Vivo. J Immunol, 187, 5, 2112-21

Bähner F, Weiss EK, Birke G, Maier N, Schmitz D, Rudolph U, Frotscher M, Traub RD, Both M, Draguhn A (2011) Cellular correlate of assembly formation in oscillating hippocampal networks in vitro. Proc Natl Acad Sci U S A, doi: 10.1073/pnas.1103546108

Zenatti PP, Ribeiro D, Li W, Zuurbier L, Silva MC, Paganin M, Tritapoe J, Hixon JA, Silveira AB, Cardoso BA, Sarmento LM, Correia N, Toribio ML, Kobarg J, Horstmann M, Pieters R, Brandalise SR, Ferrando AA, Meijerink JP, Durum SK, Yunes JA, Barata JT (2011) Oncogenic IL7R gain-of-function mutations in childhood T-cell acute lymphoblastic leukemia. Nature Genetics 43, 932-939

Martins LR, Lúcio P, Silva MC, Gameiro P, Silva MG, Barata JT (2011) On CK2 regulation of chronic lymphocytic leukemia cell viability. Mol Cell Biochem, 356, 1-2, 51-5.

Parmentier J, Becker MM, Heintz U, Fricker G (2011) Stability of liposomes containing bioenhancers and tetraether lipids In simulated gastro-intestinal fluids. Int J Pharm, 405, 1-2, 210-217

Betge J, Langner C (2011) Vascular invasion, perineural invasion, and tumour budding: predictors of outcome in colorectal cancer. Acta Gastroenterol Belg, 74, 516-529

Chávez JC, de Blas GA, de la Vega-Beltrán JL, Nishigaki T, Chirinos M, González-González ME, Larrea F, Solís A, Darszon A, Treviño CL. (2011) The opening of maitotoxin-sensitive calcium channels induces the acrosome reaction in human spermatozoa: differences from the zona pellucida. Asian J Androl, 13, 1, 159–165.

Cetinkaya M, Xiao S, Graeter F (2011) Bottom-up computational modeling of semi-crystalline fibers: from atomistic to continuum scale. Phys. Chem. Chem. Phys., 13, 10426-10429

Cetinkaya M, Xiao S, Markert B, Stacklies W, Graeter F (2011) Silk fiber mechanics from multiscale force distribution analysis. Biophys J, 100, 5, 1298-305.

Xiao S, Stacklies W, Debesa C, Graeter F (2011) Force distribution determines optimal length of beta-sheet crystals for mechanical robustness. Soft Matter, 7, 1308-1311

Cetinkaya M, Xiao S, Graeter F (2011) Effects of Crystalline Subunit Size on Silk Fiber Mechanics Soft Matter, DOI:10.1039/C1SM05470H.

Berkemeier F, Bertz M, Xiao S, Pinotsis N, Wilmanns M, Graeter F, Rief M (2011) Fast-folding alpha-helices as reversible strain absorbers in the muscle protein myomesin. Proc Natl Acad Sci USA, 23, 108, 34, 14139-44.

Kohl C, Tessarz P, von der Malsburg K, Zahn R, Bukau B, Mogk A (2011) Cooperative and independent activities of Sgt2 and Get5 in the targeting of tail-anchored proteins. Biol Chem. 392, 7, 601-608

Beez D, Sanchez CP, Stein WD, Lanzer M (2011) Genetic predisposition favors the acquisition of stable artemisinin resistance in malaria parasites. Antimicrob Agents Chemother, 55, 1, 50-5

Kupke T, Di Cecco L, Müller HM, Neuner A, Adolf F, Wieland F, Nickel W, Schiebel E (2011) Targeting of Nbp1 to the inner nuclear membrane is essential for spindle pole body duplication. EMBO J, 30, 16, 3337-52

Luconi L, Araki Y, Erlemann S, Schiebel E
(2011) The CENP-A chaperone Scm3 becomes enriched at kinetochores in anaphase independently of CENP-A incorporation. Cell Cycle, 10, 19, 3369-3378

Mardin BR, Agircan FG, Lange C, Schiebel E (2011) Plk1 Controls the Nek2A-PP1gamma Antagonism in Centrosome Disjunction. Curr Biol, 21, 13, 1145-51

Reiss S, Rebhan I, Backes P, Romero-Brey I, Erfle H, Matula P, Kaderali L, Poenisch M, Blankenburg H, Hiet MS, Longerich T, Diehl S, Ramirez F, Balla T, Rohr K, Kaul A, Bühler S, Pepperkok R, Lengauer T, Albrecht M, Eils R, Schirmacher P, Lohmann V, (2011) Recruitment and Activation of a Lipid Kinase by Hepatitis C Virus NS5A Is Essential for Integrity of the Membranous Replication Compartment. Cell Host Microbe, 9, 1, 32-45

Backs J, Worst BC, Lehmann LH, Patrick DM, Jebessa Z, Kreusser MM, Sun Q, Chen L, Heft C, Katus HA, Olson EN (2011) Selective repression of MEF2 activity by PKA-dependent proteolysis of HDAC4. J Cell Biol, 195, 3, 403-15

Meder B, Scholz EP, Hassel D, Wolff C, Just S, Berger IM, Patzel E, Karle C, Katus HA, Rottbauer W. (2011) Reconstitution of defective protein trafficking rescues Long-QT syndrome in zebrafish. Biochem Biophys Res Commun 408, 2, 218-224

Just S, Meder B, Berger IM, Etard C, Trano N, Patzel E, Hassel D, Marquart S, Dahme T, Vogel B, Fishman MC, Katus HA, Strähle U, Rottbauer W. (2011) The myosin-interacting protein SMYD1 is essential for sarcomere organization. J Cell Sci, 124, 3127-3136

Bartol A, Laib AM, Augustin HG (2011) Tumor Vessel Associated-Pericytes. The Tumor Microenvironment, 4, Tumor-Associated Fibroblasts and their Matrix, Mueller, Margareta M.; Fusenig, Norbert E. (Eds.). Springer

Zenkert C, Takahashi T, Diesner MO, Oezbek S (2011) Morphological and molecular analysis of the Nematostella vectensis cnidom. PLoS One, 6, 7, e22725

Kuhn P, Weiche B, Sturm L, Sommer E, Drepper F, Warscheid B, Sourjik V, Koch HG (2011) The bacterial SRP receptor, SecA and the ribosome use overlapping binding sites on the SecY translocon. Traffic, 12, 5, 563-578

Pietrosiuk A, Lenherr ED, Falk S, Bönemann G, Kopp J, Zentgraf H, Sinning I, Mogk A (2011) Molecular basis for the unique role of the AAA+ chaperone ClpV in type VI protein secretion. J Biol Chem, 286, 34, 30010-21

Caudron-Herger M, Müller-Ott K, Mallm JP, Marth C, Schmidt U, Fejes-Tóth K, Rippe K (2011) Coding RNAs with a non-coding function: Maintenance of open chromatin structure. Nucleus, 2, 5, 410-24

Kirmse R, Otto H, Ludwig T (2011) Interdependency of cell adhesion, force generation, and extracellular proteolysis in matrix remodelling. J Cell Sci, 124, 1857-1866

Hellmann JK, Münter S, Kudryashev M, Schulz S, Heiss K, Müller AK, Matuschewski K, Spatz JP, Schwarz US, Frischknecht F (2011) Environmental constraints guide migration of malaria parasites. PLoS Pathog. 7, 6, e1002080.

Perschmann N, Hellmann JK, Frischknecht F, Spatz JP (2011) Induction of malaria parasite migration by synthetically tunable microenvironments. Nano Lett, 11, 4468-4474

Gilbert DF, Erdmann G, Zhang X, Fritzsche A, Demir K, Jaedicke A, Muehlenberg K, Wanker EE, Boutros M (2011) A Novel Multiplex Cell Viability Assay for High-Throughput RNAi Screening. PLoS ONE, 6, 12, e28338

Roldán A, Comini MA, Crispo M, Krauth-Siegel RL. (2011) Lipoamide dehydrogenase is essential for both bloodstream and procyclic Trypanosoma brucei Mol Microbiol, 81, 3, 623-39

Hsu FC, Wirtz M, Heppel SC, Bogs J, Krämer U, Khan MS, Bub A, Hell R, Rausch T. (2011) Generation of Se-fortified broccoli as functional food: impact of Se fertilization on S metabolism. Plant Cell Environ 34, 2, 192-207

Kappes F, Waldmann T, Mathew V, Yu J, Zhang L, Khodadoust MS, Chinnaiyan AM, Luger K, Erhardt S, Schneider R, Markovitz DM (2011) The DEK oncoprotein is a Su(var) that is essential to heterochromatin integrity. Genes Dev 25, 7, 673-678.

Hundeshagen P, Hamacher-Brady A, Eils R, Brady NR (2011) Concurrent detection of autolysosome formation and lysosomal degradation by flow cytometry in a high-content screen for inducers of autophagy. BMC Biology, 9, 38

Pan X, Rudolph JM, Abraham L, Habermann A, Haller C, Krijnse-Locker J, Fackler OT (2011) HIV-1 Nef compensates for disorganization of the immunological synapse by inducing TGN-associated Lck signaling. Blood, 119, 3, 786-97.

Erfle H, Eskova A, Reymann J, Starkuviene V (2011) Cell arrays and high-content screening. Methods Mol Biol, 785, 277-87

Weick A, Augustin HG (2011) Double Attack on Tumors by Targeting With Guidance Molecules. Arterioscler Thromb Vasc Biol, 31, 4, 721-2.

Zenkert C, Takahashi T, Diesner MO, Oezbek S (2011) Morphological and Molecular Analysis of the Nematostella vectensis Cnidom. PLoS ONE, 6, e22725

Diesner MO, Welle A, Kazanci M, Kaiser P, Spatz JP, Koelsch P (2011) In vitro observation of dynamic ordering processes in the extracellular matrix of living, adherent cells. Biointerphases, 6, 171-180

Eichenlaub MP, Ettwiller L (2011) De-Novo Genesis of Enhancers in Vertebrates. PLoS Biology, 9, 11, e1001188.

González Avalos P, Reichenzeller M, Eils R, Gladilin E (2011) Probing compressibility of the nuclear interior in wild-type and lamin deficient cells using microscopic imaging and computational modeling. J Biomech, 44, 15, 2642-2648

Benz C, Mulindwa J, Ouna B, Clayton C (2011) The Trypanosoma brucei zinc finger protein ZC3H18 is involved in differentiation. Mol Biochem Parasitol 177, 2, 148-151

Long G, Hiet MS, Windisch MP, Lee JY, Lohmann V, Bartenschlager R. (2011) Mouse hepatic cells support assembly of infectious hepatitis C virus particles. Gastroenterology, 141, 3, 1057-66

Weger BD, Sahinbas M, Otto GW, Mracek P, Armant O, Dolle D, Lahiri K, Vallone D, Ettwiller L, Geisler R, Foulkes NS, Dickmeis T (2011) The Light Responsive Transcriptome of the Zebrafish: Function and Regulation PLoS ONE, 6, 2

Ruf S, Symmons O, Uslu VV, Dolle D, Hot C, Ettwiller L, Spitz F (2011) Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor Nature Genetics, 43, 379–386

Castro DS, Martynoga B, Parras C, Ramesh V, Pacary E, Johnston C, Drechsel D, Lebel-Potter M, Galinanes Garcia L, Hunt C, Dolle D, Bithell A, Ettwiller L, Buckley N, Guillemot F (2011) A novel function of the proneural factor Ascl1 in progenitor proliferation identified by genome-wide characterization of its targets. Genes Dev 25, 930-945

Lerich A, Langhans M, Sturm S, Robinson DG (2011) Is the 6 kDa tobacco etch viral protein a bona fide ERES marker? J Experimental Botany, 62, 5013-23

Verma B, Ponnuswamy A, Gnanasundram SV, Das S (2011) Cryptic AUG is important for 48S ribosomal assembly during internal initiation of translation of Coxsackievirus B3 RNA. J Gen Virol, 92, 2310-2319

Archer SK, Inchaustegui D, Queiroz R, Clayton C (2011) The cell cycle regulated transcriptome of Trypanosoma brucei. PLoS One, 31, 6, 3, e18425.

Delhi P, Queiroz R, Inchaustegui D, Carrington M, Clayton C (2011) Is There a Classical Nonsense-Mediated Decay Pathway in Trypanosomes? PLoS One, 6, 9, e25112

Gaffarogullari EC, Masterson LR, Metcalfe EE, Traaseth NJ, Balatri E, Musa MM, Mullen D, Distefano MD, Veglia G (2011) A Myristoyl/Phosphoserine Switch Controls cAMP-Dependent Protein Kinase Association to Membranes. J Mol Biol, 411, 4, 823-836

Seibert MM,...Rocker A,...Hajdu J (2011) Single mimivirus particles intercepted and imaged with an X-ray laser Nature, 470, 78–81

Knezevic P, Obreht D, Curcin S, Petrusic M, Aleksic V, Kostanjsek R, Petrovic O (2011) Phages of Pseudomonas aeruginosa: response to environmental factors and in vitro ability to inhibit bacterial growth and biofilm formation. J Appl Microbiol, 111,1, 245-254

Oleksiuk O, Jakovljevic V, Vladimirov N, Carvalho R, Paster E, Ryu WS, Meir Y, Wingreen NS, Kollmann M, Sourjik V (2011) Thermal Robustness of Signaling in Bacterial Chemotaxis. Cell, 145, 312–321

Staudacher K, Staudacher I, Ficker E, Seyler C, Gierten J, Kisselbach J, Rahm AK, Trappe K, Schweizer PA, Becker R, Katus HA, Thomas D (2011) Carvedilol targets human K(2P) 3.1 (TASK1) K(+) leak channels. Br J Pharmacol, 163, 5, 1099-1110

Weinreuter M, Kreußer M, Lehmann LH, Heft C, Jürgensen L, Mueller OJ, Groene HJ, Katus HA, Backs J (2011) Die Rolle der Calcium/Calmodulin-abhängigen Kinase II bei Ischämie/Reperfusion des Herzens am Mausmodell. Clin Res Cardiol 100, Suppl 1

Iudinkova ES, Bunina DA, Ulianov SV, Gavrilov AA, Razin SV. (2011) Patterns of the histone modifications across the chicken alpha-globin genes domain. Mol Biol (Mosk), 45, 4, 662-7.

Ioudinkova ES, Ulianov SV, Bunina D, Iarovaia OV, Gavrilov AA, Razin SV (2011) The inactivation of the pi gene in chicken erythroblasts of adult lineage is not mediated by packaging of the embryonic part of the alpha-globin gene domain into a repressive heterochromatin-like structure. Epigenetics, 6, 12, 1481-88

Lang G, Bonnet J, Umlauf D, Karmodiya K, Koffler J, Stierle M, Devys D, Tora L (2011) The tightly controlled deubiquitination activity of the human SAGA complex differentially modifies distinct gene regulatory elements. Mol Cell Biol, 31, 18, 3734-44

Hao Y, Kong X, Ruan Y, Gan H, Chen H, Zhang C, Ren S, Gu J (2011) CDK11p46 and RPS8 associate with each other and suppress translation in a synergistic manner. Biochem Biophys Res Commun, 407, 169-174

Scheuring D, Viotti C, Krüger F, Künzl F, Sturm S, Bubeck J, Hillmer S, Frigerio L, Robinson DG, Pimpl P, Schumacher K (2011) Multivesicular Bodies Mature from the Trans-Golgi Network/Early Endosome in Arabidopsis. The Plant Cell, 23, 9, 3463 -3481

Wölfle SJ, Strebovsky J, Bartz H, Sähr A, Arnold C, Kaiser C, Dalpke AH, Heeg K (2011) PD-L1 expression on tolerogenic APCs is controlled by STAT-3. Eur J Immunol, 41, 2, 413-24

Klug W, Dietl A, Simon B, Sinning I, Wild K (2011) Phosphorylation of LRP1 regulates the interaction with Fe65. FEBS Lett, 585, 20, 3229-35

Betge J, Pollheimer MJ, Schlemmer A, Hoefler G, Langner C (2011) Gastric cancer and concomitant renal cancer: a systematic immunohistochemical and molecular analysis. Oncol Rep, 26, 567-575

Betge J, Pollheimer MJ, Kornprat P, Rehak P, Vieth M, Langner C (2011) Perineural invasion is a strong and independent predictor of lymph node involvement in colorectal cancer. Dis Colon Rectum, 54, e273.

Basu A, Jain P, Sarkar P, Gangodkar S, Deshpande D, Ganti K, Shetty S, Ghosh K (2011) Dengue virus infection of SK Hep1 cells: inhibition of in vitro angiogenesis and altered cytomorphology by expressed viral envelope glycoprotein. FEMS Immunol Med Microbiol, 62, 2, 140-7