Ruprecht-Karls-Universität Heidelberg
HBIGS homepage | Forgot password

Publications by HBIGS PhD students:

Publications in 2013

Khaimov V, Hofmann S, Druffel-Augustin S, Mogk A, Tyedmers J, Stoecklin G, Bukau B (2013) Coordination of Translational Control and Protein Homeostasis during Severe Heat Stress. Curr Biol, 23, 24, 2452-62

Scholz EP, Carrillo-Bustamante P, Fischer F, Wilhelms M, Zitron E, Dössel O, Katus H, Seemann G (2013) Rotor termination is critically dependent on kinetic properties of I kur inhibitors in an in silico model of chronic atrial fibrillation. PLoS One, 8, 12, e83179

Lommel M, Winterhalter PR, Willer T, Dahlhoff M, Schneider MR, Bartels MF, Renner-Müller I, Ruppert T, Wolf E, Strahl S (2013) Protein O-mannosylation is crucial for E-cadherin-mediated cell adhesion. Proc Natl Acad Sci U S A, 110, 52, 21024-9

Köstler WJ, Zeisel A, Körner C, Tsai JM, Jacob-Hirsch J, Ben-Chetrit N, Sharma K, Cohen-Dvashi H, Yitzhaky A, Lader E, Tschulena U, Rechavi G, Domany E, Wiemann S, Yarden Y (2013) Epidermal growth-factor - induced transcript isoform variation drives mammary cell migration. PLoS One, 8, 12, e80566

Klinger M, Wang W, Kuhns S, Bärenz F, Dräger-Meurer S, Pereira G, Gruss OJ (2013) The novel centriolar satellite protein SSX2IP targets Cep290 to the ciliary transition zone. Mol Biol Cell, [Epub ahead of print]

Cesbron F, Brunner M, Diernfellner AC (2013) Light-dependent and circadian transcription dynamics in vivo recorded with a destabilized luciferase reporter in neurospora. PLoS One, 8, 12, e83660

Gaffarogullari EC, Krause A, Balbo J, Herten DP, Jäschke A (2013) Microscale thermophoresis provides insights into mechanism and thermodynamics of ribozyme catalysis. RNA Biol, 10, 12, 1815-21

Abu El Maaty MA, Gad MZ (2013) Vitamin D deficiency and cardiovascular disease: potential mechanisms and novel perspectives. J Nutr Sci Vitaminol (Tokyo), 59, 6, 479-88

Höfner T, Zeier M, Hatiboglu G, Eisen C, Schönberg G, Hadaschik B, Teber D, Duensing S, Trumpp A, Hohenfellner M, Pahernik S (2013) The impact of type 2 diabetes on the outcome of localized renal cell carcinoma. World J Urol, 10.1007/s00345-013-1231-z

Dean KE, Fields A, Geer MJ, King EC, Lynch BT, Manohar RR, McCall JR, Palozola KC, Zhang Y, Liebl EC (2013) An allele of sequoia dominantly enhances a trio mutant phenotype to influence Drosophila larval behavior. PLoS One, 8, 12, e84149

Loibl M, Strahl S (2013) Protein O-mannosylation: What we have learned from baker´s yeast. Biochim Biophys Acta, 1833, 11, 2438–2446

Börner K, Niopek D, Cotugno G, Kaldenbach M, Pankert T, Willemsen J, Zhang X, Schürmann N, Mockenhaupt S, Serva A, Hiet MS, Wiedtke E, Castoldi M, Starkuviene V, Erfle H, Gilbert DF, Bartenschlager R, Boutros M, Binder M, Streetz K, Kräusslich HG, Gr (2013) Robust RNAi enhancement via human Argonaute-2 overexpression from plasmids, viral vectors and cell lines. Nucleic Acids Res, 41, 21, e199

Schwab EH, Halbig M, Glenske K, Wagner AS, Wenisch S, Cavalcanti-Adam EA (2013) Distinct Effects of RGD-glycoproteins on Integrin-Mediated Adhesion and Osteogenic Differentiation of Human Mesenchymal Stem Cells. Int J Med Sci, 10,12, 1846 - 1859

Khan MM, Strack S, Wild F, Hanashima A, Gasch A, Brohm K, Reischl M, Carnio S, Labeit D, Sandri M, Labeit S, Rudolf R (2013) Role of autophagy, SQSTM1, SH3GLB1, and TRIM63 in the turnover of nicotinic acetylcholine receptors. Autophagy, 10, 1, 1-14

Yeh CM, Glöck M, Ryu S. (2013) An optimized whole-body cortisol quantification method for assessing stress levels in larval zebrafish. PLoS One, 8, 11, e79406.

Matsuo Y, Granneman S, Thoms M, Manikas RG, Tollervey D, Hurt E (2013) Coupled GTPase and remodelling ATPase activities form a checkpoint for ribosome export. Nature, 505, 7481, 112-6

Adam G, Berger C, Feldner A, Yang WJ, Wüstehube-Lausch J, Herberich SE, Pinder M, Gesierich S, Hammes HP, Augustin HG, Fischer A (2013) Synaptojanin-2 Binding Protein Stabilizes the Notch Ligands DLL1 and DLL4 and Inhibits Sprouting Angiogenesis. Circ Res, 113, 11, 1206-18

Hentze N, Mayer MP (2013) Analyzing protein dynamics using hydrogen exchange mass spectrometry. J Vis Exp, 81, e50839

Fernandez-Fernandez C, Große K, Sourjik V, Collier J (2013) The β-sliding clamp directs the localization of HdaA to the replisome in Caulobacter crescentus. Microbiology, 159, 11, 2237-48

Winterhalter PR, Lommel M, Ruppert T, Strahl S (2013) O-glycosylation of the non-canonical T-cadherin from rabbit skeletal muscle by single mannose residues. FEBS Lett, 587, 22, 3715-21

Eykelenboom JK, Harte EC, Canavan L, Pastor Peidro A, Calvo-Asensio I, Llorens-Agost M, Lowndes NF. (2013) ATR activates the S-M checkpoint during unperturbed growth to ensure sufficient replication prior to mitotic onset. Cell Rep, 5, 4, 1095-107

Dutta D, Xiang J, Edgar BA. (2013) RNA Expression Profiling from FACS-Isolated Cells of the Drosophila Intestine. Curr Protoc Stem Cell Biol, 27, 2F.2.1-2F.2.12

Safferling K, Sütterlin T, Westphal K, Ernst C, Breuhahn K, James M, Jäger D, Halama N, Grabe N (2013) Wound healing revised: A novel reepithelialization mechanism revealed by in vitro and in silico models. J Cell Biol, 203, 4, 691-709

Witman N, Heigwer J, Thaler B, Lui WO, Morrison JI (2013) miR-128 regulates non-myocyte hyperplasia, deposition of extracellular matrix and Islet1 expression during newt cardiac regeneration. Dev Biol, 383, 2, 253-63

Abu El Maaty MA, Hanafi RS, El Badawy S, Gad MZ (2013) Association of suboptimal 25-hydroxyvitamin D levels with knee osteoarthritis incidence in post-menopausal Egyptian women. Rheumatol Int, 33, 11, 2903-7

Koehler A, Schlupf J, Schneider M, Kraft B, Winter C, Kashef J (2013) Loss of Xenopus cadherin-11 leads to increased Wnt/β-catenin signaling and up-regulation of target genes c-myc and cyclin D1 in neural crest. Dev Biol, 383, 1, 132-45

Irene A. Amedo, Fauzia K. Musasia and Paul O. Mireji. (2013) A Book Chapter: Physiology and Molecular Responses to Cadmium in Plants and Animals. Cadmium Characteristics, Sources of Exposure, Health and Environment Effects, editor: Mirza Hasanuzzaman, Masayuki Fujita, published by Nova Science Publishers. pages 133 – 150.

Preuss S, Stein W (2013) Comparison of Two Voltage-Sensitive Dyes and Their Suitability for Long-Term Imaging of Neuronal Activity. PLoS ONE, 8, 10, 75678

Herget U, Wolf A, Wullimann MF, Ryu S (2013) Molecular neuroanatomy and chemoarchitecture of the neurosecretory preoptic-hypothalamic area in zebrafish larvae J Comp Neur, doi: 10.1002/cne.23480

Seybold C, Schiebel E. (2013) Spindle pole bodies. Curr Biol, 23, 19, R858-R860

Kruss S, Erpenbeck L, Amschler K, Mundinger TA, Boehm H, Helms HJ, Friede T, Andrews RK, Schön MP, Spatz JP (2013) Adhesion Maturation of Neutrophils on Nanoscopically Presented Platelet Glycoprotein Ibα.
ACS Nano, [Epub ahead of print]

Klein CA, Droll D, Clayton C (2013) SUMOylation in Trypanosoma brucei. PeerJ, 8, 1, e180

Voloshanenko O, Erdmann G, Dubash TD, Augustin I, Metzig M, Moffa G, Hundsrucker C, Kerr G, Sandmann T, Anchang B, Demir K, Boehm C, Leible S, Ball CR, Glimm H, Spang R, Boutros M (2013) Wnt secretion is required to maintain high levels of Wnt activity in colon cancer cells. Nat Commun, 4, 2610, doi: 10.1038/ncomms3610.

Kirchmaier S, Höckendorf B, Möller EK, Bornhorst D, Spitz F, Wittbrodt J (2013) Efficient site-specific transgenesis and enhancer activity tests in medaka using PhiC31 integrase. Development, 140, 4287-4295

Kirchmaier S, Lust K, Wittbrodt J (2013) Golden GATEway Cloning - A Combinatorial Approach to Generate Fusion and Recombination Constructs. PLoS One, 8, 10, e76117

Sommer E, Koler M, Frank V, Sourjik V, Vaknin A (2013) The sensory histidine kinases TorS and EvgS tend to form clusters in Escherichia coli cells. PLoS One, 8, 10, e77708

Bucur O, Stancu AL, Goganau I, Petrescu SM, Pennarun B, Bertomeu T, Dewar R, Khosravi-Far R. (2013) Combination of bortezomib and mitotic inhibitors down-modulate Bcr-Abl and efficiently eliminates tyrosine-kinase inhibitor sensitive and resistant Bcr-Abl-positive leukemic cells. PLoS One, 8, 10, e77390

Forieri I, Wirtz M, Hell R (2013) Toward new perspectives on the interaction of iron and sulfur metabolism in plants. Front Plant Sci, 4, 357

Gobbini E, Cesena D, Galbiati A, Lockhart A, Longhese MP (2013) Interplays between ATM/Tel1 and ATR/Mec1 in sensing and signaling DNA double-strand breaks. DNA repair (Amst), 12, 10, 791-799

Panayotova-Dimitrova D, Feoktistova M, Ploesser M, Kellert B, Hupe M, Horn S, Makarov R, Jensen F, Porubsky S, Schmieder A, Zenclussen AC, Marx A, Kerstan A, Geserick P, He YW, Leverkus M (2013) cFLIP regulates skin homeostasis and protects against TNF-induced keratinocyte apoptosis. Cell Rep, 5, 2, 397-408

Peschke M, Hempel F (2013) Glycoprotein import: a common feature of complex plastids? Plant Signal Behav, 8, 10, pii: e26050

Doumpas N, Jékely G, Teleman AA (2013) Wnt6 is required for maxillary palp formation in Drosophila. BMC Biol, 11, 104

Viotti C*, Krüger F*, Krebs M, Neubert C, Fink F, Lupanga U, Scheuring D, Boutté Y, Frescatada-Rosa M, Wolfenstetter S, Sauer N, Hillmer S, Grebe M, Schumacher K; *equal contribution (2013) The Endoplasmic Reticulum Is the Main Membrane Source for Biogenesis of the Lytic Vacuole in Arabidopsis. The Plant Cell, tpc.113.114827

Balk B, Maicher A, Dees M, Klermund J, Luke-Glaser S, Bender K, Luke B (2013) Telomeric RNA-DNA hybrids affect telomere-length dynamics and senescence. Nat Struct Mol Biol, 20, 10, 1199–1205

Viotti C*, Krüger F*, Krebs M, Neubert C, Fink F, Lupanga U, Scheuring D, Boutté Y, Frescatada-Rosa M, Wolfenstetter S, Sauer N, Hillmer S, Grebe M, Schumacher K; *equal contribution (2013) The Endoplasmic Reticulum Is the Main Membrane Source for Biogenesis of the Lytic Vacuole in Arabidopsis. The Plant Cell, tpc.113.114827

Durdevic Z, Mobin MB, Hanna K, Lyko F, Schaefer M (2013) The RNA Methyltransferase Dnmt2 Is Required for Efficient Dicer-2-Dependent siRNA Pathway Activity in Drosophila. Cell Rep, 4, 5, 931-7

Bali KK, Selvaraj D, Satagopam VP, Lu J, Schneider R, Kuner R (2013) Genome-wide identification and functional analyses of microRNA signatures associated with cancer pain. EMBO Mol Med, 5, 11, 1740-58

Bhardwaj R, Müller HM, Nickel W, Seedorf M. (2013) Oligomerization and Ca2+/Calmodulin control binding of the ER Ca2+-sensors STIM1 and STIM2 to plasma membrane lipids. Biosci Rep, doi:10.1042/BSR20130089

Hofmann JC, Tegha-Dunghu J, Dräger S, Will CL, Lührmann R, Gruss OJ (2013) The prp19 complex directly functions in mitotic spindle assembly. PLoS One, 8, 9, :e74851

Heigwer F, Kerr G, Walther N, Glaeser K, Pelz O, Breinig M, Boutros M (2013) E-TALEN: a web tool to design TALENs for genome engineering. Nucleic Acids Res, doi: 10.1093/nar/gkt789

Hegemann JD, Zimmermann M, Zhu S, Klug D, Marahiel MA (2013) Lasso peptides from proteobacteria: Genome mining employing heterologous expression and mass spectrometry. Biopolymers, 100, 5, 527-542

Demir K, Kirsch N, Beretta CA, Erdmann G, Ingelfinger D, Moro E, Argenton F, Carl M, Niehrs C, Boutros M (2013) RAB8B Is Required for Activity and Caveolar Endocytosis of LRP6. Cell Rep, 4, 6, 1224-34

Mancini Lombardi I, Palani S, Meitinger F, Darieva Z, Hofmann A, Sharrocks AD, Pereira G (2013) Lre1 Directly Inhibits the NDR/Lats Kinase Cbk1 at the Cell Division Site in a Phosphorylation-Dependent Manner. Curr Biol, 23, 18, 1736-45

Schmitt S, Safferling K, Westphal K, Hrabowski M, Müller U, Angel P, Wiechert L, Ehemann V, Müller B, Holland-Cunz S, Stichel D, Harder N, Rohr K, Germann G, Matthäus F, Schirmacher P, Grabe N, Breuhahn K (2013) Stathmin Regulates Keratinocyte Proliferation and Migration during Cutaneous Regeneration. PLoS One, 8, 9, e75075

Patra C, van Amerongen MJ, Ghosh S, Ricciardi F, Sajjad A, Novoyatleva T, Mogha A, Monk KR, Mühlfeld C, Engel FB (2013) Organ-specific function of adhesion G protein-coupled receptor GPR126 is domain-dependent. Proc Natl Acad Sci U S A, 110, 42, 16898-903

Bali KK, Venkataramani V, Satagopam VP, Gupta P, Schneider R, Kuner R (2013) Transcriptional mechanisms underlying sensitization of peripheral sensory neurons by Granulocyte-/Granulocyte-macrophage colony stimulating factors. Mol Pain, 9, 1, 48

Tóth K, Böhm V, Sellmann C, Danner M, Hanne J, Berg M, Barz I, Gansen A, Langowski J. (2013) Histone- and DNA sequence-dependent stability of nucleosomes studied by single-pair FRET. Cytometry A, 83, 9, 839-46

Albrecht SC*, Sobotta MC*, Bausewein D*, Aller I, Hell R, Dick TP, Meyer AJ (*equal contribution) (2013) Redesign of Genetically Encoded Biosensors for Monitoring Mitochondrial Redox Status in a Broad Range of Model Eukaryotes. J Biomol Screen, doi: 10.1177/1087057113499634

Pohl TLM, Schwab EH, Cavalcanti-Adam EA (2013) Covalent Binding of BMP-2 on Surfaces Using a Self-assembled Monolayer Approach. J Vis Exp, 78, e50842, doi:10.3791/50842

Banderas A, Guiliani N (2013) Bioinformatic Prediction of Gene Functions Regulated by Quorum Sensing in the Bioleaching Bacterium Acidithiobacillus ferrooxidans. Int J Mol Sci, 14, 8, 16901-16

Gangadharan V, Selvaraj D, Kurejova M, Njoo C, Gritsch S, Skoricová D, Horstmann H, Offermanns S, Brown AJ, Kuner T, Tappe-Theodor A, Kuner R (2013) A novel biological role for the phospholipid lysophosphatidylinositol in nociceptive sensitization via activation of diverse G-protein signalling pathways in sensory nerves in vivo. Pain, doi:pii: S0304-3959(13)00461-2. 10.1016/j.pain.2013.08.019.

Metz P, Reuter A, Bender S, Bartenschlager R (2013) Interferon-stimulated genes and their role in controlling hepatitis C virus. J Hepatol, doi:pii: S0168-8278(13)00548-5. 10.1016/j.jhep.2013.07.033.

Stemmer M, Schubart C (2013) Allopatric differentiation and morphometric growth in a Jamaican freshwater crab, with the discrimination of a cave phenotype. Studies on Neotropical Fauna and Environment, 48, 2, 95-103

Jones DT, Hutter B, ... Zuckermann M, ... Lichter P, Pfister SM; International Cancer Genome Consortium PedBrain Tumor Project (2013) Recurrent somatic alterations of FGFR1 and NTRK2 in pilocytic astrocytoma. Nat Genet, 45, 8, 927-32

Lanz TV, Becker S, Osswald M, Bittner S, Schuhmann MK, Opitz CA, Gaikwad S, Wiestler B, Litzenburger UM, Sahm F, Ott M, Iwantscheff S, Grabitz C, Mittelbronn M, von Deimling A, Winkler F, Meuth SG, Wick W, Platten M (2013) Protein kinase Cβ as a therapeutic target stabilizing blood-brain barrier disruption in experimental autoimmune encephalomyelitis. Proc Natl Acad Sci U S A, 110, 36, 14735-40

Fischer F, Vonderlin N, Zitron E, Seyler C, Scherer D, Becker R, Katus HA, Scholz EP (2013) Inhibition of cardiac Kv1.5 and Kv4.3 potassium channels by the class Ia anti-arrhythmic ajmaline: mode of action Naunyn Schmiedebergs Arch Pharmacol, [Epub ahead of print]

Bärenz F, Inoue D, Yokoyama H, Tegha-Dunghu J, Freiss S, Draeger S, Mayilo D, Cado I, Merker S, Klinger M, Höckendorf B, Pilz S, Hupfeld K, Steinbeisser H, Lorenz H, Ruppert T, Wittbrodt J, Gruss OJ (2013) The centriolar satellite protein SSX2IP promotes centrosome maturation. J Cell Biol, 202, 1, 81-95

Teif VB, Erdel F, Beshnova DA, Vainshtein Y, Mallm JP, Rippe K (2013) Taking into account nucleosomes for predicting gene expression. Methods, 62, 1, 26-38

Grossardt C, Engeland CE, Bossow S, Halama N, Zaoui K, Leber MF, Springfeld C, Jaeger D, von Kalle C, Ungerechts G (2013) Granulocyte-macrophage colony-stimulating factor-armed oncolytic measles virus is an effective therapeutic cancer vaccine. Hum Gene There, 24, 7, 644-54

Palanisamy N, Danielsson A, Kokkula C, Yin H, Bondeson K, Wesslén L, Duberg AS, Lennerstrand J. (2013) Implications of baseline polymorphisms for potential resistance to NS3 protease inhibitors in Hepatitis C virus genotypes 1a, 2b and 3a. Antiviral Res, 99, 1, 12-7

Fischer M, Horn S, Belkacemi A, Kojer K, Petrungaro C, Habich M, Ali M, Küttner V, Bien M, Kauff F, Dengjel J, Herrmann JM, Riemer J (2013) Protein import and oxidative folding in the mitochondrial intermembrane space of intact mammalian cells. Mol Biol Cell, 24, 14, 2160-70

Benz J, Reinstein J, Meinhart A (2013) Structural Insights into the Effector – Immunity System Tae4/Tai4 from Salmonella typhimurium. PLoS One, 8, 6, e67362

Winkler A, Heintz U, Lindner R, Reinstein J, Shoeman RL, Schlichting I (2013) A ternary AppA-PpsR-DNA complex mediates light regulation of photosynthesis-related gene expression. Nat Struct Mol Biol, doi: 10.1038/nsmb.2597

Geyh S, Öz S, Cadeddu R-P, Fröbel J, Brückner B, Kündgen A, Fenk R, Bruns I, Zilkens C, Hermsen D, Gattermann N, Kobbe G, Germing U, Lyko F, Haas R, Schröder T (2013) Insufficient stromal support in MDS results from molecular and functional deficits of mesenchymal stromal cells. Leukemia, doi:10.1038/leu.2013.193

Sinn R, Wittbrodt J (2013) An eye on eye development. Mech Dev, 130, 6-8, 347-58

Neubert P, Walch A (2013) Current frontiers in clinical research application of MALDI imaging mass spectrometry. Exp Rev Prot, 10, 3, 259-73

Yang C, Bratzel F, Hohmann N, Koch M, Turck F, Calonje M (2013) VAL- and AtBMI1-Mediated H2Aub Initiate the Switch from Embryonic to Postgerminative Growth in Arabidopsis. Curr Biol, doi: 10.1016/j.cub.2013.05.050.

Fischer RM, Fontinha BM, Kirchmaier S, Steger J, Bloch S, Inoue D, Panda S, Rumpel S, Tessmar-Raible K (2013) Co-expression of VAL- and TMT-opsins uncovers ancient photosensory interneurons and motorneurons in the vertebrate brain. PLoS Biol, 11, 6, e1001585

Hofner T, Macher-Goeppinger S, Klein C, Rigo-Watermeier T, Eisen C, Pahernik S, Hohenfellner M, Trumpp A, Sprick MR (2013) Development and Characteristics of Preclinical Experimental Models for the Research of Rare Neuroendocrine Bladder Cancer. J Urol, doi:pii: S0022-5347(13)04670-3. 10.1016/j.juro.2013.06.053.

Loibl M, Strahl S (2013) Photoaffinity labeling of protein O-mannosyltransferases of the PMT1/PMT2 subfamily. Methods Mol Biol, 1022, 107-17

Seidel T, Dräbing T, Seemann G, Sachse FB (2013) A semi-automatic approach for segmentation of three-dimensional microscopic image stacks of cardiac tissue. In S. Ourselin, D. Rueckert, and N. Smith, editors, Lecture Notes in Computer Science, 7945, 300-7

Chugunov AO, Koromyslova AD, Berkut AA, Peigneur S, Tytgat J, Polyansky AA, Pentkovsky VM, Vassilevski AA, Grishin EV, Efremov RG (2013) Modular organization of alpha-toxins from scorpion venom mirrors domain structure of their targets - sodium channels. J Biol Chem, 288, 26, 19014-27

Drexler JF1... Rupp D…BartenschlagerR...Drosten C (2013) Evidence for novel hepaciviruses in rodents. PLoS Pathog, 9, 6, e1003438.

Loukanov T, Jaschinski C, Kirilov M, Klimpel H, Karck M, Gorenflo M (2013) Cyclooxygenase-2 expression in lung in patients with congenital heart malformations and pulmonary arterial hypertension. Thorac Cardiovasc Surg, 61, 4, 307-11

Abu El Maaty MA, Hassanein SI, Hanafi RS, Gad MZ (2013) Insights on vitamin D's role in cardiovascular disease: investigating the association of 25-hydroxyvitamin D with the dimethylated arginines. J Nutr Sci Vitaminol (Tokyo), 59, 3, 172-7

Oka OB, Pringle MA, Schopp IM, Braakman I, Bulleid NJ (2013) ERdj5 is the ER reductase that catalyzes the removal of non-native disulfides and correct folding of the LDL receptor. Mol Cell, 50, 6, 793-804

Peschke M, Moog D, Klingl A, Maier UG, Hempel F (2013) Evidence for glycoprotein transport into complex plastids. Proc Natl Acad Sci U S A, 110, 26, 10860-5

Hennig BP, Fischer T (2013) The great repression: Chromatin and cryptic transcription. Transcription, 4, 3

Reiss S*, Harak C*, Romero-Brey I, Radujkovic D, Klein R, Ruggieri A, Rebhan I, Bartenschlager R, Lohmann V(*equal contribution) (2013) The Lipid Kinase Phosphatidylinositol-4 Kinase III Alpha Regulates the Phosphorylation Status of Hepatitis C Virus NS5A. PLoS Pathog 9, 5, e1003359

Leppek K, Schott J, Reitter S, Poetz F, Hammond MC, Stoecklin G (2013) Roquin Promotes Constitutive mRNA Decay via a Conserved Class of Stem-Loop Recognition Motifs. Cell, 153, 4, 869-881

De Marco RJ, Groneberg AH, Yeh CM, Castillo Ramírez LA, Ryu S (2013) Optogenetic elevation of endogenous glucocorticoid level in larval zebrafish. Front Neural Circuits, 7, 82

Weislogel JM, Bengtson CP, Müller MK, Hörtzsch JN, Bujard M, Schuster CM, Bading H. (2013) Requirement for nuclear calcium signaling in Drosophila long-term memory. Sci Signal, 7, 6, 274

Fadda A, Färber V, Droll D, Clayton C (2013) The roles of 3'-exoribonucleases and the exosome in trypanosome mRNA degradation. RNA, doi: 10.1261/rna.038430.113

Mortimer JC, Yu. X, Albrecht S, Sicilia F, Huichalaf Carbonell M, Ampuero D, Michaelson LV, Murphy AM, Matsunaga T, Kurz S, Stephens E, Baldwin TC, Ishii T, Napier JA, Weber AP, Handford MG, Dupree P (2013) Abnormal Glycosphingolipid Mannosylation Triggers Salicylic Acid–Mediated Responses in Arabidopsis. The Plant Cell, 25, 5, 1881-1894

Mata-Martínez E1, José O, Torres-Rodríguez P, Solís López A, Sánchez-Tusie AA, Sánchez-Guevara Y, Treviño MB, Treviño CL (2013) Measuring intracellular Ca2+ changes in human sperm using four techniques: conventional fluorometry, stopped flow fluorometry, flow cytometry and single cell imaging. J Vis Exp, 24, 75, e50344

Huang SH, Wang J, Sui WH, Chen B, Zhang XY, Yan J, Geng Z, Chen ZY (2013) BDNF-Dependent Recycling Facilitates TrkB Translocation to Postsynaptic Density during LTP via a Rab11-Dependent Pathway. J Neurosci, 33, 21, 9214-30

Durdevic Z, Schaefer M (2013) tRNA modifications: Necessary for correct tRNA-derived fragments during the recovery from stress? Bioessays, 35, 4, 323-7

Kumar A, Bühler S, Selisko B, Davidson A, Mulder K, Canard B, Miller S, Bartenschlager R (2013) Nuclear localization of dengue virus nonstructural protein 5 does not strictly correlate with efficient viral RNA replication and inhibition of type I interferon signaling. J Virol, 87, 8, 4545-57

Jebessa ZH, Worst B, Katus HA, Backs J (2013) Protein Kinase A-dependent proteolysis of HDAC4 is mediated by ABHD5. Clin Res Cardiol, 102, 1, 10.1007/s00392-013-1100-1

Droll D, Minia I, Fadda A, Singh A, Stewart M, Queiroz R, Clayton C (2013) Post-transcriptional regulation of the trypanosome heat shock response by a zinc finger protein. PLoS Pathog, 9, 4, e1003286

Droll D, Minia I, Fadda A, Singh A, Stewart M, Queiroz R, Clayton C (2013) Post-transcriptional regulation of the trypanosome heat shock response by a zinc finger protein. PLoS Pathog, 9, 4, e1003286

Winter J, Link S, Witzigmann D, Hildenbrand C, Previti C, Diederichs S (2013) Loop-miRs: active microRNAs generated from single-stranded loop regions. Nucleic Acids Res, doi: 10.1093/nar/gkt251

Bergbold N, Lemberg MK (2013) Emerging role of rhomboid family proteins in mammalian biology and disease. Biochim Biophys Acta, 1828, 12, 2840-2848

Wiestler B...Weiss EK...WickW (2013) Malignant astrocytomas of elderly patients lack favorable molecular markers: an analysis of the NOA-08 study collective. Neuro-Oncology, 15, 8, 1017-26

Baccelli I, Schneeweiss A, Riethdorf S, Stenzinger A, Schillert A, Vogel V, Klein C, Saini M, Bäuerle T, Wallwiener M, Holland-Letz T, Höfner T, Sprick M, Scharpff M, Marmé F, Sinn HP, Pantel K, Weichert W, Trumpp A (2013) Identification of a population of blood circulating tumor cells from breast cancer patients that initiates metastasis in a xenograft assay. Nat Biotechnol, 31, 6, 539-44

Mardin BR, Isokane M, Cosenza MR, Krämer A, Ellenberg J, Fry AM, Schiebel E (2013) EGF-Induced Centrosome Separation Promotes Mitotic Progression and Cell Survival. Dev Cell, doi:pii: S1534-5807(13)00161-5. 10.1016/j.devcel.2013.03.012.

Fischer F, Vonderlin N, Seyler C, Zitron E, Schernus B, Katus H, Scholz E. (2013) Acute and subacute effects of the selective serotonin-noradrenaline reuptake inhibitor duloxetine on cardiac hERG channels. Naunyn Schmiedebergs Arch Pharmacol, [Epub ahead of print]

Keestra AM, Winter MG, Auburger JJ, Frässle SP, Xavier MN, Winter SE, Kim A, Poon V, Ravesloot MM, Waldenmaier JF, Tsolis RM, Eigenheer RA, Bäumler AJ (2013) Manipulation of small Rho GTPases is a pathogen-induced process detected by NOD1. Nature, 496, 7444, 233-7

Evers C, Jungwirth M, Morgenthaler J, Hinderhofer K, Maas B, Janssen J, Jauch A, Hehr U, Steinbeisser H, Moog U (2013) Craniofrontonasal syndrome in a male due to chromosomal mosaicism involving EFNB1: further insights into a genetic paradox. Clin Genet, doi: 10.1111/cge.12171

Schillert A, Trumpp A, Sprick MR (2013) Label retaining cells in cancer - The dormant root of evil? Cancer Lett, 341, 1, 73-9

Becker J, Barysch SV, Karaca S, Dittner C, Hsiao HH, Berriel Diaz M, Herzig S, Urlaub H, Melchior F (2013) Detecting endogenous SUMO targets in mammalian cells and tissues. Nat Struct Mol Biol, 20, 4, 525-31

Gansen A, Hieb AR, Böhm V, Tóth K, Langowski J (2013) Closing the gap between single molecule and bulk FRET analysis of nucleosomes. PLoS One, 8, 4, :e57018

Koffler J, Holzinger D, Sanhueza GA, Flechtenmacher C, Zaoui K, Lahrmann B, Grabe N, Plinkert PK, Hess J. (2013) Submaxillary gland androgen-regulated protein 3A expression is an unfavorable risk factor for the survival of oropharyngeal squamous cell carcinoma patients after surgery. Eur Arch Otorhinolaryngol, 270, 4, 1493-500

Kapitein N, Bönemann G, Pietrosiuk A, Seyffer F, Hausser I, Locker JK, Mogk A. (2013) ClpV recycles VipA/VipB tubules and prevents non-productive tubule formation to ensure efficient type VI protein secretion. Mol Microbiol, doi: 10.1111/mmi.12147

Becker J, Barysch SV, Karaca S, Dittner C, Hsiao HH, Berriel Diaz M, Herzig, S, Urlaub S, Melchior F (2013) Detecting endogenous SUMO targets in mammalian cells and tissues. Nat Struct Mol Biol, doi:10.1038/nsmb.2526.

Öz S, Maercker C, Breiling A (2013) Embryonic Carcinoma Cells Show Specific Dielectric Resistance Profiles during Induced Differentiation. PLoS One, 8, 3, e59895

Bieback K, Vinci M, Elvers-Hornung S, Bartol A, Gloe T, Czabanka M, Klüter H, Augustin H, Vajkoczy P (2013) Recruitment of human cord blood-derived endothelial colony-forming cells to sites of tumor angiogenesis. Cytotherapy, doi:pii: S1465-3249(13)00357-5. 10.1016/j.jcyt.2013.01.215

Hoffmann S, Berger IM, Glaser A, Bacon C, Li L, Gretz N, Steinbeisser H, Rottbauer W, Just S, Rappold G (2013) Islet1 is a direct transcriptional target of the homeodomain transcription factor Shox2 and rescues the Shox2-mediated bradycardia. Basic Res Cardiol, 108, 2, 339

Rocker A, Mutschler H, Meinhart A (2013) Der tödliche Mechanismus der Zeta-Toxine. BIOspektrum, 131-133

Ernst AM, Zacherl S, Herrmann A, Hacke M, Nickel W, Wieland FT, Brügger B (2013) Differential transport of Influenza A neuraminidase signal anchor peptides to the plasma membrane. FEBS Lett, 587, 9, 1411–1417

Doumpas N, Ruiz-Romero M, Blanco E, Edgar B, Corominas M, Teleman AA (2013) Brk regulates wing disc growth in part via repression of Myc expression. EMBO Rep, 14, 3, 261-268

Marx A, Godinez WJ, Tsimashchuk V, Bankhead P, Rohr K, Engel U (2013) Xenopus cytoplasmic linker associated protein 1 (XCLASP1) promotes axon elongation and advance of pioneer microtubules. Mol Biol Cell, 24, 10, 1544-58

Schröder HM, Hoffmann S, Hecker M, Korff T, Ludwig T (2013) The tetraspanin network modulates MT1-MMP cell surface trafficking. Int J Biochem Cell Biol, doi:pii: S1357-2725(13)00067-8. 10.1016/j.biocel.2013.02.020.

Koch MA, Scheriau C, Betzin A, Hohmann N, Sharbel TF (2013) Evolution of cryptic gene pools in Hypericum perforatum: the influence of reproductive system and gene flow. Ann Bot, doi: 10.1093/aob/mct065

Zembruski NC, Nguyen CD, Theile D, Ali RM, Herzog M, Hofhaus G, Heintz U, Burhenne J, Haefeli WE, Weiss J (2013) Liposomal sphingomyelin influences the cellular lipid profile of human lymphoblastic leukemia cells without effect on P-glycoprotein activity. Mol Pharm, 10, 3, 1020-34

Drozdova PB, Radchenko EA, Rogoza TM, Khokhrina MA, Mironova LN (2013) SFP1 controls translation termination in Saccharomyces cerevisiae via regulation of the Sup35p (eRF3) level. Mol Biol (Mosk), 47, 2, 275-81

Chien SC, Brinkmann EM, Teuliere J, Garriga G (2013) Caenorhabditis elegans PIG-1/MELK Acts in a Conserved PAR-4/LKB1 Polarity Pathway to Promote Asymmetric Neuroblast Divisions Genetics, 193, 897–909

Fauzia K Musasia, Alfred O Isaac, Daniel K Masiga, Irene A Omedo, Ramadhan Mwakubambanya, Richard Ochieng, Paul O Mireji (2013) Sex-specific induction of CYP6 cytochrome P450
genes in cadmium and lead tolerant Anopheles
gambiae Malaria Journal 2013, 12:97

Kapitein N, Mogk A. (2013) Deadly syringes: type VI secretion system activities in pathogenicity and interbacterial competition. Curr Opin Microbiol, doi:pii: S1369-5274(12)00175-0. 10.1016/j.mib.2012.11.009

Durdevic Z, Hanna K, Gold B, Pollex T, Cherry S, Lyko F, Schaefer M (2013) Efficient RNA virus control in Drosophila requires the RNA methyltransferase Dnmt2. EMBO reports, 14, 3, 269-75

Kuhns S, Schmidt KN, Reymann J, Gilbert DF, Neuner A, Hub B, Carvalho R, Wiedemann P, Zentgraf H, Erfle H, Klingmüller U, Boutros M, Pereira G (2013) The microtubule affinity regulating kinase MARK4 promotes axoneme extension during early ciliogenesis. J Cell Biol, 200, 4, 505–522

Kummer E, Oguchi Y, Seyffer F, Bukau B, Mogk A (2013) Mechanism of Hsp104/ClpB inhibition by prion curing Guanidinium hydrochloride. FEBS Lett. doi:pii: S0014-5793(13)00129-4. 10.1016/j.febslet.2013.02.011.

Yu X, Cojocaru V, Wade RC (2013) Conformational diversity and ligand tunnels of mammalian cytochrome P450s. Biotechnol Appl Biochem, 60, 1, 134-45

Meitinger F, Palani S, Hub B, Pereira G. (2013) Dual function of the NDR-kinase Dbf2 in the regulation of the F-BAR protein Hof1 during cytokinesis. Mol Biol Cell, 24, 9, 1290-304

Alagoz M, Chiang SC, Sharma A, El-Khamisy SF (2013) ATM deficiency results in accumulation of DNA-Topoisomerase I covalent intermediates in neural cells PLoS One, 8, 4, e58239.

Birk J, Meyer M, Aller I, Hansen HG, Odermatt A, Dick TP, Meyer AJ, Appenzeller-Herzog C (2013) Endoplasmic reticulum: Reduced and oxidized glutathione revisited. J Cell Sci, 10.1242/jcs.117218

Medert R, Schuster A, Schwarz LK, Schwab T, Schaefer KH (2013) Spiking rate of myenteric neurons recorded from multi-electrode arrays depending on local microenvironment. physica status solidi, 10, 5, 877–881

Werner A, Disanza A, Reifenberger N, Habeck G, Becker J, Calabrese M, Urlaub H, Lorenz H, Schulman B, Scita G, Melchior F (2013) SCF(Fbxw5) mediates transient degradation of actin remodeller Eps8 to allow proper mitotic progression. Nat Cell Biol, doi: 10.1038/ncb2661

Horn T, Boutros M (2013) Design of RNAi reagents for invertebrate model organisms and human disease vectors. Methods Mol Biol, 942, 315-46

Esser-Nobis K, Romero-Brey I, Ganten TM, Gouttenoire J, Harak C, Klein R, Schemmer P, Binder M, Schnitzler P, Moradpour D, Bartenschlager R, Polyak SJ, Stremmel W, Penin F, Eisenbach C, Lohmann V (2013) Analysis of hepatitis C virus resistance to silibinin in vitro and in vivo points to a novel mechanism involving nonstructural protein 4B. Hepatology, doi: 10.1002/hep.26260

Fazekas D, Koltai M, Türei D, Módos D, Pálfy M, Dúl Z, Zsákai L, Szalay-Bek M, Lenti K, Farkas IJ, Vellai T, Csermely P, Korcsmáros T. (2013) SignaLink 2 -- a signaling pathway resource with multi-layered regulatory networks. BMC Syst Biol, 7, 1, 7

Zeymer C, Werbeck ND, Schlichting I, Reinstein J (2013) The molecular mechanism of Hsp100 chaperone inhibition by the prion curing agent guanidinium chloride. J Biol Chem 288, 10, 7065-76

Hermann D, Mezler M, Müller MK, Wicke K, Gross G, Draguhn A, Bruehl C, Nimmrich V. (2013) Synthetic Aβ oligomers (Aβ(1-42) globulomer) modulate presynaptic calcium currents: Prevention of Aβ-induced synaptic deficits by calcium channel blockers. Eur J Pharmacol, 702, 1-3, 44-55

Helfer S, Schott J, Stoecklin G, Förstemann K. (2013) AU-rich element-mediated mRNA decay can occur independently of the miRNA machinery in mouse embryonic fibroblasts and Drosophila S2-cells. PLoS One, 7, 1, e28907

Hellmann JK, Perschmann N, Spatz JP, Frischknecht F. (2013) Tunable Substrates Unveil Chemical Complementation of a Genetic Cell Migration Defect. Adv Healthc Mater, doi: 10.1002/adhm.201200426

Eichhorn T, Hiller C, Hirschfelder K, Frank M, Krauth-Siegel RL, Müller R, Mertens R, Efferth T. (2013) Identification by high-throughput in silico screening of radio-protecting compounds targeting the DNA-binding domain of the tumor suppressor p53. Cancer Genomics Proteomics, 10, 1, 35-45

Di Donato V, Auer TO, Duroure K, Del Bene F (2013) Characterization of the calcium binding protein family in zebrafish. PloS One, 8, 1, e53299