Ruprecht-Karls-Universität Heidelberg
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Publications by HBIGS PhD students:

Publications in 2017

Navaneethan Palanisamy and Johan Lennerstrand. (2017) Computational Prediction of Usutu Virus E Protein B Cell and T Cell Epitopes for Potential Vaccine Development. Scand J Immunol. 2017 May;85(5):350-364. doi: 10.1111/sji.12544.

Begas P*, Liedgens L*, Moseler A, Meyer AJ, Deponte M (*equal contribution) (2017) Glutaredoxin catalysis requires two distinct glutathione interaction sites. Nat Commun, 8, 14835

Garg J, Feng YX, Jansen SR, Friedrich J, Lezoualc'h F, Schmidt M, Wieland T (2017) Catecholamines facilitate VEGF-dependent angiogenesis via β2-adrenoceptor-induced Epac1 and PKA activation. Oncotarget, doi pending

Pervolaraki K, Stanifer ML, Münchau S, Renn LA, Albrecht D, Kurzhals S, Senís E, Grimm D, Schröder-Braunstein J, Rabin RL, Boulant S (2017) Type I and Type III Interferons Display Different Dependency on Mitogen-Activated Protein Kinases to Mount an Antiviral State in the Human Gut. Front Immunol,

Klingenberg M, Matsuda A, Diederichs S, Patel T (2017) Non-coding RNA in hepatocellular carcinoma: Mechanisms, biomarkers and therapeutic targets. J Hepatol, doi: 10.1016/j.jhep.2017.04.009

Lindner R, Hartmann E, Tarnawski M, Winkler A, Frey D, Reinstein J, Meinhart A, Schlichting I (2017) Photoactivation mechanism of a bacterial light-regulated adenylyl cyclase. J Mol Biol, doi: 10.1016/j.jmb.2017.03.020

Ulrich K, Finkenzeller C, Merker S, Rojas F, Matthews K, Ruppert T, Krauth-Siegel R L (2017) Stress-induced protein S-glutathionylation and S-trypanothionylation in African trypanosomes – a quantitative redox proteome and thiol analysis Antioxid Redox Signal, doi: 10.1089/ars.2016.6947

Di Pisa F, Landi G, Dello Iacono L, Pozzi C, Borsari C, Ferrari S, Santucci M, Santarem N, Cordeiro-da-Silva A, Moraes CB, Alcantara LM, Fontana V, Freitas-Junior LH, Gul S, Kuzikov M, Behrens B, Pöhner I, Wade RC, Costi MP, Mangani S (2017) Chroman-4-One Derivatives Targeting Pteridine Reductase 1 and Showing Anti-Parasitic Activity. Molecules, 22, 3, 426

Blank MF, Chen S, Poetz F, Schnölzer M, Voit R, Grummt I (2017) SIRT7-dependent deacetylation of CDK9 activates RNA polymerase II transcription. Nucleic Acids Res, 45, 5, 2675-2686

de Sena Cortabitarte A, Degenhardt F, Strohmaier J, Lang M, Weiss B, Roeth R, Giegling I, Heilmann-Heimbach S, Hofmann A, Rujescu D, Fischer C, Rietschel M, Nöthen MM, Rappold GA, Berkel S (2017) Investigation of SHANK3 in schizophrenia. Am J Med Genet B Neuropsychiatr Genet, DOI: 10.1002/ajmg.b.32528

Daturpalli S, Knieß RA, Lee CT, Mayer MP. (2017) Large rotation of the N-terminal domain of Hsp90 is important for interaction with some but not all client proteins. J Mol Biol, doi: 10.1016/j.jmb.2017.03.025

Giaretta S, Prasad D, Forieri I, Vamerali T, Trentin AR, Wirtz M, Hell R, Masi A (2017) Apoplastic gamma-glutamyl transferase activity encoded by GGT1 and GGT2 is important for vegetative and generative development. Plant Physiol Biochem, 115, 44-56

Himmels P, Paredes I, Adler H, Karakatsani A, Luck R, Marti HH, Ermakova O, Rempel E, Stoeckli ET, Ruiz de Almodóvar C (2017) Motor neurons control blood vessel patterning in the developing spinal cord. Nat Commun, 8, 14583

Sütterlin T, Tsingos E, Bensaci J, Stamatas GN, Grabe N (2017) A 3D self-organizing multicellular epidermis model of barrier formation and hydration with realistic cell morphology based on EPISIM. Sci Rep, 7, 43472

Géraud C, Koch PS, Zierow J, Klapproth K, Busch K, Olsavszky V, Leibing T, Demory A, Ulbrich F, Diett M, Singh S, Sticht C, Breitkopf-Heinlein K, Richter K, Karppinen SM, Pihlajaniemi T, Arnold B, Rodewald HR, Augustin HG, Schledzewski K, Goerdt S (2017) GATA4-dependent organ-specific endothelial differentiation controls liver development and embryonic hematopoiesis. J Clin Invest, 127, 3, 1099-1114

Wallner ES, López-Salmerón V, Belevich I, Poschet G, Jung I, Grünwald K, Sevilem I, Jokitalo E, Hell R, Helariutta Y, Agustí J, Lebovka I, Greb T (2017) Strigolactone- and Karrikin-Independent SMXL Proteins Are Central Regulators of Phloem Formation. Curr Biol, doi: 10.1016/j.cub.2017.03.014

Comba P, Eisenschmidt A, Gahan LR, Herten DP, Nette G, Schenk G, Seefeld M (2017) Is CuII coordinated to patellamides inside Prochloron cells Chemistry - A European Journal

Hoffmann S, Schmitteckert S, Griesbeck A, Preiss H, Sumer S, Rolletschek A, Granzow M, Eckstein V, Niesler B, Rappold GA (2017) Comparative expression analysis of Shox2-deficient embryonic stem cell-derived sinoatrial node-like cells. Stem Cell Res, 21, 51-57

Yu Y, Oberlaender K, Bengtson CP, Bading H (2017) One nuclear calcium transient induced by a single burst of action potentials represents the minimum signal strength in activity-dependent transcription in hippocampal neurons. Cell Calcium, doi: 10.1016/j.ceca.2017.03.003.

Banaeiyan AA, Theobald J, Paukštyte J, Wölfl S, Adiels CB, Goksör M (2017) Design and fabrication of a scalable liver-lobule-on-a-chip microphysiological platform. Biofabrication, 9, 1, 015014

Weiler SM, Pinna F, Wolf T, Lutz T, Geldiyev A, Sticht C, Knaub M, Thomann S, Bissinger M, Wan S, Rössler S, Becker D, Gretz N, Lang H, Bergmann F, Ustiyan V, Kalin TV, Singer S, Lee JS, Marquardt JU, Schirmacher P, Kalinichenko VV, Breuhahn K (2017) Induction of Chromosome Instability by Activation of Yes Associated Protein and Forkhead box M1 in Liver Cancer. Gastroenterology, doi: 10.1053/j.gastro.2017.02.018

Shi D, Tavhelidse T, Thumberger T, Wittbrodt J, Greb T (2017) Bifacial stem cell niches in fish and plants. Curr Opin Genet Dev, 45, 28-33

Ghanem A, Kitanovic A, Holzwarth J, Wölfl S (2017) Mutational analysis of fructose-1,6-bis-phosphatase FBP1 indicates partially independent functions in gluconeogenesis and sensitivity to genotoxic stress. Microbial Cell, 4, 2, 52 - 63

Hänggi K, Vasilikos L, Valls AF, Yerbes R, Knop J, Spilgies LM, Rieck K, Misra T, Bertin J, Gough PJ, Schmidt T, de Almodòvar CR, Wong WW. (2017) RIPK1/RIPK3 promotes vascular permeability to allow tumor cell extravasation independent of its necroptotic function. Cell Death Dis, 8, 2, e2588

Valls AF, Shen Y, Schmidt T (2017) A core of macrophages facilitates ovarian cancer metástasis. Perspective Transl Cancer Res, 6, Suppl 1, S189-S196.

Solís-López A, Kriebs U, Marx A, Mannebach S, Liedtke WB, Caterina MJ, Freichel M, Tsvilovskyy VV. (2017) Analysis of TRPV channel activation by stimulation of FCεRI and MRGPR receptors in mouse peritoneal mast cells. PLoS One, 12, 2, e0171366

Kumar R, Neuser N, Tyedmers J (2017) Hitchhiking vesicular transport routes to the vacuole: Amyloid recruitment to the Insoluble Protein Deposit (IPOD). Prion, 1-11

Franke KB, Bukau B, Mogk A (2017) Mutant Analysis Reveals Allosteric Regulation of ClpB Disaggregase. Front Mol Biosci, 4, 6

Toth K, Lill Y, Lehmann K, Gansen A, Langowski J (2017) How to Open a Nucleosome. Biophys J, 112, 3, 375a

Gansen A, Felekyan S, Lehmann K, Kühnemuth R, Zhang R, Tóth K, Seidel CAM, Langowski J (2017) Nucleosome Opening Kinetics and the Influence of Histone Modifications Studied by Single Molecule FRET. Biophys J, 112, 3, 217a

Lehmann K, Gansen A, Toth K, Langowski J (2017) Single Molecule Fluorescence Studies on Nucleosome Dynamics. Biophys J, 112, 3, 474a

Winz ML, Cahová H, Nübel G, Frindert J, Höfer K, Jäschke A (2017) Capture and sequencing of NAD-capped RNA sequences with NAD captureSeq. Nat Protoc, 12, 1, 122-149

Roth H, Magg V, Uch F, Mutz P, Klein P, Haneke K, Lohmann V, Bartenschlager R, Fackler OT, Locker N, Stoecklin G, Ruggieri A (2017) Flavivirus Infection Uncouples Translation Suppression from Cellular Stress Responses. mBio, 8, 1, e02150-16

Weyer FA, Gumiero A, Gesé GV, Lapouge K, Sinning I (2017) Structural insights into a unique Hsp70-Hsp40 interaction in the eukaryotic ribosome-associated complex. Nat Struct Mol Biol, doi: 10.1038/nsmb.3349

Palanisamy N, Osman N, Ohnona F, Xu HT, Brenner B, Mesplède T, Wainberg MA. (2017) Does antiretroviral treatment change HIV-1 codon usage patterns in its genes: a preliminary bioinformatics study. AIDS Res Ther, 14, 1, 2

Herrmannsdörfer F, Flottmann B, Nanguneri S, Venkataramani V, Horstmann H, Kuner T, Heilemann M (2017) 3D d STORM Imaging of Fixed Brain Tissue. Methods Mol Biol, 1538, 169-184

Seleit A, Krämer I, Ambrosio E, Dross N, Engel U, Centanin L (2017) Sequential organogenesis sets two parallel sensory lines in medaka. Development, doi: 10.1242/dev.142752

Heinrich P, Petschick LL, Northcott GL, Tremblay LA, Ataria JM, Braunbeck T. (2017) Assessment of cytotoxicity, genotoxicity and 7-ethoxyresorufin-O-deethylase (EROD) induction in sediment extracts from New Zealand urban estuaries. Ecotoxicology, doi: 10.1007/s10646-016-1756-1

Inoue D, Stemmer M, Thumberger T, Ruppert T, Bärenz F, Wittbrodt J, Gruss OJ (2017) Expression of the novel maternal centrosome assembly factor Wdr8 is required for vertebrate embryonic mitoses. Nat Commun, 8, 14090

Nguyen MT, Knieß RA, Daturpalli S, Le Breton L, Ke X, Chen X, Mayer MP (2017) Isoform-specific phosphorylation in human Hsp90β affects interaction with clients and the cochaperone Cdc37. J Mol Biol, doi: 10.1016/j.jmb.2017.01.011

Caydasi AK, Khmelinskii A, Duenas-Sanchez R, Kurtulmus B, Knop M, Pereira G (2017) Temporal and compartment-specific signals coordinate mitotic exit with spindle position. Nat Commun, 8, 14129

Abu El Maaty MA, Wölfl S (2017) Effects of 1,25(OH)₂D₃ on Cancer Cells and Potential Applications in Combination with Established and Putative Anti-Cancer Agents. Nutrients, 9, 1

Muthinja MJ, Ripp J, Hellmann JK, Haraszti T, Dahan N, Lemgruber L, Battista A, Schütz L, Fackler OT, Schwarz US, Spatz JP, Frischknecht F (2017) Microstructured Blood Vessel Surrogates Reveal Structural Tropism of Motile Malaria Parasites. Adv Healthc Mater, doi: 10.1002/adhm.201601178

Willemsen J, Wicht O, Wolanski JC, Baur N, Bastian S, Haas DA, Matula P, Knapp B, Meyniel-Schicklin L, Wang C, Bartenschlager R, Lohmann V, Rohr K, Erfle H, Kaderali L, Marcotrigiano J, Pichlmair A, Binder M (2017) Phosphorylation-Dependent Feedback Inhibition of RIG-I by DAPK1 Identified by Kinome-wide siena Screening. Mol Cell, 65, 1–13

Hasanov Z, Ruckdeschel T, König C, Mogler C, Kapel SS, Korn C, Spegg C, Eichwald V, Wieland M, Appak S, Augustin HG (2017) Endosialin Promotes Atherosclerosis Through Phenotypic Remodeling of Vascular Smooth Muscle Cells. Arterioscler Thromb Vasc Biol, doi: 10.1161/ATVBAHA.116.308455

Klug D, Frischknecht F (2017) Motility precedes egress of malaria parasites from oocysts. Elife, doi: 10.7554/eLife.19157

Pegoraro S, Duffey M, Otto TD, Wang Y, Rösemann R, Baumgartner R, Fehler SK, Lucantoni L, Avery VM, Moreno-Sabater A, Mazier D, Vial HJ, Strobl S, Sanchez CP, Lanzer M (2017) SC83288 is a clinical development candidate for the treatment of severe malaria. Nat Commun, 8, 14193

Xing S, Mehlhorn DG, Wallmeroth N, Asseck LY, Kar R, Voss A, Denninger P, Schmidt VA, Schwarzländer M, Stierhof YD, Grossmann G, Grefen C (2017) Loss of GET pathway orthologs in Arabidopsis thaliana causes root hair growth defects and affects SNARE abundance. Proc Natl Acad Sci U S A, doi: 10.1073/pnas.1619525114

Hauser SL, ...Friedrich M,...Kappos, L (2017) Ocrelizumab versus Interferon Beta-1a in Relapsing Multiple Sclerosis. N Engl J Med, 376, 3, 221-234