Ruprecht-Karls-Universität Heidelberg
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Publications by HBIGS PhD students:

Publications in 2020

Fueller J, Herbst K, Meurer M, Gubicza K, Kurtulmus B, Knopf JD, Kirrmaier D, Buchmuller BC, Pereira G, Lemberg MK, Knop M (2020) CRISPR-Cas12a-assisted PCR tagging of mammalian genes. J Cell Biol, doi: 10.1083/jcb.201910210, doi:

Felix I, Lomada SK, Barth H, Wieland T (2020) Bacillus anthracis' PA63 Delivers the Tumor Metastasis Suppressor Protein NDPK-A/NME1 into Breast Cancer Cells. Int J Mol Sci, doi: 10.3390/ijms21093295, doi:

Sloan J, Hakenjos JP, Gebert M, Ermakova O, Gumiero A, Stier G, Wild K, Sinning I, Lohmann JU (2020) Structural basis for the complex DNA binding behavior of the plant stem cell regulator WUSCHEL. Nat Commun, doi: 10.1038/s41467-020-16024-y, doi:

Boumezbeur AH, Bruer M, Stoecklin G, Mack M (2020) Rational engineering of transcriptional riboswitches leads to enhanced metabolite levels in Bacillus subtilis. Metab Eng, doi: 10.1016/j.ymben.2020.05.002, doi:

Rafiee MR, Sigismondo G, Kalxdorf M, Förster L, Brügger B, Béthune J, Krijgsveld J (2020) Protease-resistant streptavidin for interaction proteomics. Mol Syst Biol, doi: 10.15252/msb.20199370, doi:

Denzer L, Schroten H, Schwerk C (2020) From Gene to Protein—How Bacterial Virulence Factors Manipulate Host Gene Expression During Infection. Int J Mol Sci, 21, 3730, doi:

Bajak K, Clayton C (2020) Polysome Profiling and Metabolic Labeling Methods to Measure Translation in Trypanosoma brucei. Methods Mol Biol, doi: 10.1007/978-1-0716-0294-2_7, doi:

Corless S, Höcker S, Erhardt S (2020) Centromeric RNA and its function at and beyond centromeric chromatin. J Mol Biol, doi: 10.1016/j.jmb.2020.03.027, doi:

Remo A, Li X, Schiebel E, Pancione M (2020) The Centrosome Linker and Its Role in Cancer and Genetic Disorders. Trends Mol Med, doi: 10.1016/j.molmed.2020.01.011, doi:

Montgomery ST, Frey DL, Mall MA, Stick SM, Kicic A (2020) Rhinovirus Infection Is Associated With Airway Epithelial Cell Necrosis and Inflammation via Interleukin-1 in Young Children With Cystic Fibrosis. Front Immunol, DOI 10.3389/fimmu.2020.00596, doi:

Segin S, Berlin M, Richter C, Flockerzi V, Medert R, Worley P, Freichel M, Londoño JEC (2020) Cardiomyocyte-Specific Deletion of Orai1 Reveals Its Protective Role in Angiotensin-II-Induced Pathological Cardiac Remodeling
Cells. 2020 Apr 28;9(5), doi:

Knopf JD, Lemberg MK (2020) Derlins with scissors: primordial ERAD in bacteria. EMBO J, doi: 10.15252/embj.2020105012, doi:

Drainas AP, Lambuta RA, Ivanova I, Serçin Ö, Sarropoulos I, Smith ML, Efthymiopoulos T, Raeder B, Stütz AM, Waszak SM, Mardin BR, Korbel JO (2020) Genome-wide Screens Implicate Loss of Cullin Ring Ligase 3 in Persistent Proliferation and Genome Instability in TP53-Deficient Cells. Cell Reports, doi: 10.1016/j.celrep.2020.03.029, doi:

Fröhlich B, Yang Y, Thoma J, Czajor J, Lansche C, Sanchez C, Lanzer M, Cloetens P, Tanaka M (2020) Nanofocused Scanning X-ray Fluorescence Microscopy Revealing an Effect of Heterozygous Hemoglobin S and C on Biochemical Activities in Plasmodium falciparum-Infected Erythrocytes. Anal Chem, doi: 10.1021/acs.analchem.9b05111, doi:

Andreas Gruber, Riccarda Müller, Alessa Wagner, Silvia Colucci, Maja Vujić Spasić & Kerstin Leopold (2020) Total reflection X-ray fluorescence spectrometry for trace determination of iron and some additional elements in biological samples Analytical and Bioanalytical Chemistry, doi:

Hirth M, Gandla J, Höper C, Gaida MM, Agarwal N, Simonetti M, Demir A, Xie Y, Weiss C, Michalski CW, Hackert T, Ebert MP, Kuner R (2020) CXCL10 and CCL21 Promote Migration of Pancreatic Cancer Cells Toward Sensory Neurons and Neural Remodeling in Tumors in Mice, Associated With Pain in Patients.
Gastroenterology, doi:

Hagner M*, Frey DL*, Guerra M*, Dittrich AS, Halls VS, Wege S, Herth FJF, Schultz C, Mall MA (*equal contribution) (2020) New method for rapid and dynamic quantification of elastase activity on sputum neutrophils from patients with cystic fibrosis using flow cytometry. Eur Respir J, DOI: 10.1183/13993003.02355-2019, doi:

Seleit A, Gross K, Onistschenko J, Woelk M, Autorino C, Centanin L (2020) Development and Regeneration Dynamics of the Medaka Notochord. Dev Biol, doi: 10.1016/j.ydbio.2020.03.001, doi:

Dreher SI, Fischer J, Walker T, Diederichs S, Richter W (2020) Significance of MEF2C and RUNX3 Regulation for Endochondral Differentiation of Human Mesenchymal Progenitor Cells. Front Cell Dev Biol, doi: 10.3389/fcell.2020.00081, doi:

Zhang Y, Valentín Gesé G, Conz C, Lapouge K, Kopp J, Wölfle T, Rospert S, Sinning I (2020) The ribosome-associated complex RAC serves in a relay that directs nascent chains to Ssb. Nat Commun, doi: 10.1038/s41467-020-15313-w, doi:

Legrand C, Saleppico R, Sticht J, Lolicato F, Müller HM, Wegehingel S, Dimou E, Steringer JP, Ewers H, Vattulainen I, Freund C, Nickel W (2020) The Na,K-ATPase acts upstream of phosphoinositide PI(4,5)P2 facilitating unconventional secretion of Fibroblast Growth Factor 2. Commun Biol, doi: 10.1038/s42003-020-0871-y, doi:

John A, Robador JR, Vidal-Y-Sy S, Houdek P, Wladykowski E, Guenes C, Bolenz C, Schneider SW, Bauer AT, Gorzelanny C. (2020) Urothelial carcinoma of the bladder induces endothelial cell activation and hypercoagulation. Mol Cancer Res. DOI: 10.1158/1541-7786.MCR-19-1041, doi:

Eritano AS, Bromley CL, Bolea Albero A, Schütz L, Wen FL, Takeda M, Fukaya T, Sami MM, Shibata T, Lemke S, Wang YC (2020) Tissue-Scale Mechanical Coupling Reduces Morphogenetic Noise to Ensure Precision during Epithelial Folding. Dev Cell, doi: 10.1016/j.devcel.2020.02.012, doi:

Bajak K, Leiss K, Clayton CE, Erben​ E (2020) The endoplasmic reticulum-associated mRNA-binding proteins ERBP1 and ERBP2 interact in bloodstream-form Trypanosoma brucei. PeerJ, doi: 10.7717/peerj.8388, doi:

Atorino ES, Hata S, Funaya C, Neuner A, Schiebel E (2020) CEP44 ensures the formation of bona fide centriole wall, a requirement for the centriole-to-centrosome conversion. Nat Commun, doi: 10.1038/s41467-020-14767-2, doi:

Wild K, Aleksić M, Lapouge K, Juaire KD, Flemming D, Pfeffer S, Sinning I (2020) MetAP-like Ebp1 occupies the human ribosomal tunnel exit and recruits flexible rRNA expansion segments. Nat Commun, doi: 10.1038/s41467-020-14603-7, doi:

Staufer O, Schröter M, Platzman I, Spatz JP (2020) Bottom-Up Assembly of Functional Intracellular Synthetic Organelles by Droplet-Based Microfluidics. Small, doi: 10.1002/smll.201906424, doi:

Tangudu NK, Yilmaz D, Wörle K, Gruber A, Colucci S, Leopold K, Muckenthaler MU, Vujic Spasic M (2020) Macrophage-HFE Controls Iron Metabolism And Immune Responses In Aged Mice. Haematologica, doi: 10.3324/haematol.2019.235630, doi:

Pagani A*, Pettinato M*, Colucci S*, Dulja A, Rauner M, Nai A, Camaschella C, Altamura S, Muckenthaler MU, Silvestri L (*equal contribution) (2020) Hemochromatosis Proteins Are Dispensable For The Acute Hepcidin Response To BMP2. Haematologica, doi: 10.3324/haematol.2019.241984, doi:

Port F, Strein C, Stricker M, Rauscher B, Heigwer F, Zhou J, Beyersdörffer C, Frei J, Hess A, Kern K, Lange L, Langner N, Malamud R, Pavlovic B, Rädecke K, Schmitt L, Voos L, Valentini E, Boutros M (2020) A large-scale resource for tissue-specific CRISPR mutagenesis in Drosophila. Elife, doi: 10.7554/eLife.53865, doi:

Siméon S, Brotzmann K, Fisher C, Gardner I, Silvester S, Maclennan R, Walker P, Braunbeck T, Bois FY (2020) Development of a generic zebrafish embryo PBPK model and application to the developmental toxicity assessment of valproic acid analogs. Reprod Toxicol, doi: 10.1016/j.reprotox.2020.02.010, doi:

Tizian C, Lahmann A, Hölsken O, Cosovanu C, Kofoed-Branzk M, Heinrich F, Mashreghi MF, Kruglov A, Diefenbach A, Neumann C (2020) c-Maf restrains T-bet-driven programming of CCR6-negative group 3 innate lymphoid cells. Elife, doi: 10.7554/eLife.52549, doi:

Granados K, Hüser L, Federico A, Sachindra S, Wolff G, Hielscher T, Novak D, Madrigal-Gamboa V, Sun Q, Vierthaler M, Larribère L, Umansky V, Utikal J (2020) T-type calcium channel inhibition restores sensitivity to MAPK inhibitors in de-differentiated and adaptive melanoma cells. Br J Cancer, doi: 10.1038/s41416-020-0751-8, doi:

Münsterberg J, Loreth D, Brylka L, Werner S, Karbanova J, Gandrass M, Schneegans S, Besler K, Hamester F, Robador JR, Bauer AT, Werner Schneider S, Wrage M, Lamszus K, Matschke J, ...Maire C, Wikman H (2020) ALCAM contributes to brain metastasis formation in non-small-cell lung cancer through interaction with the vascular endothelium. Neuro Oncol, doi: 10.1093/neuonc/noaa028, doi:

Buljubasic F, El-Battrawy I, Lan H, Lomada SK, Chatterjee A, Zhao Z, Li X, Zhong R, Xu Q, Huang M, Liao Z, Lang S, Cyganek L, Zhou X, Wieland T, Borggrefe M, Akin I (2020) Nucleoside Diphosphate Kinase B Contributes to Arrhythmogenesis in Human-Induced Pluripotent Stem Cell-Derived Cardiomyocytes from a Patient with Arrhythmogenic Right Ventricular Cardiomyopathy. J Clin Med, doi: 10.3390/jcm9020486, doi:

Gierten J, Pylatiuk C, Hammouda OT, Schock C, Stegmaier J, Wittbrodt J, Gehrig J, Loosli F (2020) Automated high-throughput heartbeat quantification in medaka and zebrafish embryos under physiological conditions. Sci Rep, doi: 10.1038/s41598-020-58563-w, doi:

Farrants H, Tarnawski M, Müller TG, Otsuka S, Hiblot J, Koch B, Kueblbeck M, Kräusslich HG, Ellenberg J, Johnsson K (2020) Chemogenetic Control of Nanobodies. Nat Methods, doi: 10.1038/s41592-020-0746-7, doi:

Börner K, Kienle E, Huang LY, Weinmann J, Sacher A, Bayer P, Stüllein C, Fakhiri J, Zimmermann L, Westhaus A, Beneke J, Beil N, Wiedtke E, Schmelas C, Miltner D, Rau A, Erfle H, Kräusslich HG, Müller M, Agbandje-McKenna M, Grimm D (2020) Pre-arrayed Pan-AAV Peptide Display Libraries for Rapid Single-Round Screening. Mol Ther, doi: 10.1016/j.ymthe.2020.02.009, doi:

Nowrouzi A, Sertorio MG, Akbarpour M, Knoll M, Krunic D, Kuhar M, Schwager C, Brons S, Debus J, Wells SI, Wells JM, Abdollahi A (2020) Personalized Assessment of Normal Tissue Radiosensitivity via Transcriptome Response to Photon, Proton and Carbon Irradiation in Patient-Derived Human Intestinal Organoids. Cancers (Basel), doi: 10.3390/cancers12020469, doi: