Ruprecht-Karls-Universität Heidelberg
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Publications by HBIGS PhD students:

Publications in 2009

Boehm H, Mundinger TA, Boehm CHJ, Hagel V, Rauch U, Spatz JP, Curtis JE (2009) Mapping the Mechanics and Macromolecular Organization of Hyaluronan-Rich Cell Coats. Soft Matter, 5, 4331 - 4337,

Werbeck ND, Kellner JN, Barends TR, Reinstein J (2009) Nucleotide binding and allosteric modulation of the second AAA+ domain of ClpB probed by transient kinetic studies. Biochemistry 48, 30, 7240-50.

Tang W, Ehrlich I, Wolff SB, Michalski AM, Wölfl S, Hasan MT, Lüthi A, Sprengel R (2009) Faithful expression of multiple proteins via 2A-peptide self-processing: a versatile and reliable method for manipulating brain circuits. J Neurosci, 29, 8621-9

Henrich P, Kilian N, Lanzer M, Cyrklaff M (2009) 3-D analysis of the Plasmodium falciparum Maurer's clefts using different electron tomographic approaches.
Biotechnol J, 4, 6, 888-94

Mendoza-Mendoza A*, Eskova A*, Weise C, Czajkowski R, Kahmann R (* - equal contribution) (2009) Hap2 regulates the pheromone response transcription factor prf1 in Ustilago maydis. Mol Microbiol 72, 3, 683-698.

Porubl'ova LV, Rebriiev AV, Hromovyĭ TIu, Minia II, Obolens'ka MIu (2009) MALDI-TOF mass spectrometry in the investigation of large high-molecular biological compounds. Ukr Biokhim Zh, 81, 3, 46-56

Norambuena A, Metz C, Vicuña L, Silva A, Pardo E, Oyanadel C, Massardo L, González A, Soza A (2009) Galectin-8 induces apoptosis in Jurkat T cells by phosphatidic acid-mediated ERK1/2 activation supported by protein kinase A down-regulation J Biol Chem, 284, 19, 12670-9

Bach P, Tschäpe J-A, Kopietz F, Braun G, Baade JK, Wiederhold K-H, Staufenbiel M, Prinz M, Deller T, Kalinke U, Buchholz CJ, Müller UC (2009) Vaccination with Abeta-displaying virus-like particles reduces soluble and insoluble cerebral Abeta and lowers plaque burden in APP transgenic mice. J Immunol 182, 7613-7624.

Mohawk JA, Miranda-Anaya M, Tataroglu O, Menaker M (2009) Lithium and genetic inhibition of GSK3x enhance the effect of methamphetamine on circadian rhythms in the mouse. Behav Pharmacol. 20, 2, 174-83

Carrer D. C., Kummer E., Chwastek G., Chiantia S., Schwille P. (2009) Asymmetry determines the effects of natural ceramides on model membranes. Soft Matters, 17, 3279-3286

Spiegelhauer O, Dickert F, Mende S, Niks D, Hille R, Ullmann M, Dobbek H (2009) Kinetic characterization of xenobiotic reductase A from Pseudomonas putida 86 Biochemistry, 48, 11412-20

Kutz D, Meindl T, Herget U, Adam R, Timmann D, Kolb FP (2009) Rehabilitation program for cerebellar patients presenting postural ataxia. Acta Physiologica, 195, 669, 349

Ortiz J*, Funk C*, Schafer A, Lechner J (*equal contribution) (2009) Stu1 inversely regulates kinetochore capture and spindle stability. Genes Dev 23, 23, 2778-2791

Kulozik P, Jones A, Ostertag A, Herzig S (2009) Common Pathological Processes and Transcriptional Pathways in Alzheimer’s Disease and Type 2 Diabetes Alzheimer's Disease, 16, 4

Xiao S, Stacklies W, Cetinkaya M, Markertand B, Gräter F (2009) Mechanical Response of Silk Crystalline Units from Force-Distribution Analysis. Biophys J 96, 10, 3997-4005

Manful T, Cristodero M, Clayton C (2009) DRBD1 is the Trypanosoma brucei homologue of the spliceosome-associated protein 49. Mol Biochem Parasitol. 166, 2, 186-189

Schwede A, Manful T, Jha BA, Helbig C, Bercovich N, Stewart M, Clayton C (2009) The role of deadenylation in the degradation of unstable mRNAs in trypanosomes. Nucleic Acids Res. 37, 5511–5528.

Di Cecco L, Melissari E, Mariotti V, Iofridaa C, Galli A, Guidugli L, Lombardi G, Caligo MA, Iacopetti P, Pellegrini S (2009) Characterisation of gene expression profiles of yeast cells expressing BRCA1 missense variants European J Cancer, 45, 2187-2196

Hearst SM, Gilder AS, Negi SS, Davis MD, George EM, Whittom AA, Toyota CG, Husedzinovic A, Gruss OJ, Hebert MD (2009) Cajal-body formation correlates with differential coilin phosphorylation in primary and transformed cell lines J Cell Sci, 122, 11, 1872-81

Welbourn S, Jirasko V, Breton V, Reiss S, Penin F, Bartenschlager R, Pause A (2009) Investigation of a role for lysine residues in non-structural proteins 2 and 2/3 of the hepatitis C virus for their degradation and virus assembly. J Gen Virol. 90, 5, 1071-80.

Vogel B, Meder B, Just S, Laufer C, Berger I, Weber S, Katus HA, Rottbauer W (2009) In-vivo characterization of human dilated cardiomyopathy genes in zebrafish. Biochem Biophys Res Commun, 390, 3, 516-22

Laib AM, Bartol A, Alajati A, Korff T, Weber H, Augustin HG (2009) Spheroid-based human endothelial cell microvessel formation in vivo. Nat Protoc. 4, 8, 1202-15

Czemmel S, Stracke R, Weisshaar B, Cordon N, Harris NN, Walker AR, Robinson SP, Bogs J (2009) The Grapevine R2R3-MYB Transcription Factor VvMYBF1 Regulates Flavonol Synthesis in Developing Grape Berries Plant Physiology 151, 1513-30

Bönemann G, Pietrosiuk A, Diemand A, Zentgraf H, Mogk A (2009) Remodelling of VipA/VipB tubules by ClpV-mediated threading is crucial for type VI protein secretion EMBO J. 28, 4, 315-25

Fatumo S, Plaimas K, Mallm JP, Schramm G, Adebiyi E, Oswald M, Eils R, König R (2009) Estimating novel potential drug targets of Plasmodium falciparum by analysing the metabolic network of knock-out strains in silico. Infect Genet Evol. 9, 3, 351-358.

Schwede A, Manful T, Jha BA, Helbig C, Bercovich N, Stewart M, Clayton C (2009) The role of deadenylation in the degradation of unstable mRNAs in trypanosomes. Nucleic Acids Res. 37, 16, 5511-28.

Neubauer H*, Adam G*, Seeger H, Mueck AO, Solomayer E, Wallwiener D, Cahill MA, Fehm T (2009) Membrane-initiated effects of progesterone on proliferation and activation of VEGF in breast cancer cells. Climacteric, 212, 3, 230-239

Klimmeck D, Daiber PC, Brühl A, Baumann A, Frings S, Möhrlen F. (2009) Bestrophin 2: an anion channel associated with neurogenesis in chemosensory systems. J Comp Neurol, 515, 5, 585-99

Mayer U, Küller A, Daiber PC, Neudorf I, Warnken U, Schnölzer M, Frings S, Möhrlen F. (2009) The proteome of rat olfactory sensory cilia. Proteomics, 9, 2, 322-34

Lemmer P, Gunkel M, Weiland Y, Müller P, Baddeley D, Kaufmann R, Urich A, Eipel H, Amberger R, Hausmann M, Cremer C (2009) Using conventional fluorescent markers for far-field fluorescence localization nanoscopy allows resolution in the 10-nm range J Microsc., 235, 2, 163-71

Gunkel M, Erdel F, Rippe K, Lemmer P, Kaufmann R, Hörmann C, Amberger R, Cremer C (2009) Dual color localization microscopy of cellular nanostructures Biotechnol J., 4, 6, 927-38

Kaufmann R, Lemmer P, Gunkel M, Weiland Y, Müller P, Hausmann M, Baddeley D, Amberger R, Cremer C (2009) SPDM: single molecule superresolution of cellular nanostructures Proc. SPIE, 7185, 71850J

Stolp B, Reichman-Fried M, Abraham L, Pan X, Giese SI, HannemannS, Goulimari P, Raz E, Grosse R, Fackler OT (2009) HIV-1 Nef Interferes with Host Cell Motility by Deregulation of Cofilin Cell Host & Microbe, 6, 2, 174-186

Ayhanci A, Yaman S, Appak S, Gunes S (2009) Hematoprotective effect of seleno-L-methionine on cyclophosphamide toxicity in rats Drug Chem Toxicol 32, 4, 424-428

Wörz S, Winz M-L, Rohr K (2009) Geometric Alignment of 2D Gel Electrophoresis Images. Methods of Information in Medicine, 48, 4, 320-23

Srokowski CC, Masri J, Hövelmeyer N, Krembel AK, Tertilt C, Strand D, Mahnke K, Massoumi R, Waisman A, Schild H (2009) Naturally occurring short splice variant of CYLD positively regulates dendritic cell function. Blood, 113, 23, 5891-5

Garrido C, Algarra I, Maleno I, Stefanski J, Collado A, Garrido F, Garcia-Lora AM (2009) Alterations of HLA class I expression in human melanoma xenografts in immunodeficient mice occur frequently and are associated with higher tumorigenicity. Cancer Immunol Immunother. 59, 1, 13-26

Buscarlet M, Hermann R, Tang Y, Lo R, Joachim K, Stifani S (2009) Cofactor-Activated Phosphorylation is Required for Inhibition of Cortical Neuron Differentiation By Groucho/TLE1. PLoS ONE 1, 4, 12:e8107

Wohlfarth C, Efferth T (2009) Natural products as promising drug candidates for the treatment of hepatitis B and C. Acta Pharmacol Sin. 30, 1, 25-30

Brenner D, Brechmann M, Röhling S, Tapernoux M, Mock T, Winter D, Lehmann WD, Kiefer F, Thome M, Krammer PH, Arnold R. (2009) Phosphorylation of CARMA1 by HPK1 is critical for NF-kappaB activation in T cells Proc Natl Acad Sci USA, 106, 34, 14508-13

Kraft TE, Parisotto D, Schempp C, Efferth T (2009) Fighting cancer with red wine? Molecular mechanisms of resveratrol. Crit Rev Food Sci Nutr, 49, 9, 782 - 799

Sivakumar VG, Shankar P, Nalina K, Menon T (2009) Use of CHROMagar in the Differentiation of Common Species of Candida. Mycopathologia, 167, 47-9

Subramanian N, Mani P, Roy S, Gnanasundram SV, Sarkar DP, Das S. (2009) Targeted delivery of hepatitis C virus specific shRNA in mouse liver using Sendai virosomes J Gen Virol, 90, 1812–1819

Masterson, L.R., Bortone, N., Yu, T., Ha, K.N., Gaffarogullari, E.C., Nguyen, O., Veglia, G. (2009) Expression and Purification of Isotopically Labeled Peptide Inhibitors and Substrates of cAMP-dependent Protein Kinase A for NMR Analysis Protein Expr. Purif, 64, 2, 231-36.

Butler TL, Egan JR, Graf FG, Au CG, McMahon AC, North KN, Winlaw DS (2009) Dysfunction induced by ischemia versus edema: does edema matter? J Thorac Cardiovasc Surg, 138, 1, 141-7, 147.e1.

Goffinet C, Allespach I, Homann S, Tervo HM, Habermann A, Rupp D, Oberbremer L, Kern C, Tibroni N, Welsch S, Krijnse-Locker J, Banting G, Kräusslich HG, Fackler OT, Keppler OT (2009) HIV-1 antagonism of CD317 is species specific and involves Vpu-mediated proteasomal degradation of the restriction factor Cell Host Microbe, 5, 285-297

Wahl AS, Buchthal B, Rode F, Bomholt SF, Freitag HE, Hardingham GE, Rønn LCB, Bading H. (2009) Hypoxic/ischemic conditions induce expression of the putative pro-death gene Claca1 via activation of extrasynaptic N-methyl-D-aspartate receptors.
Neuroscience, 158: 344-352

Kuhn C, Frank D, Will R, Jaschinski C, Frauen R, Katus HA, Frey N (2009) DYRK1A Is a Novel Negative Regulator of Cardiomyocyte Hypertrophy. J Biol Chem, 284, 25, 17320-17327

Shi Y*, Liu X-H * , Liang D-S, Feng M , Wu L-Q, Yang J-L , Li Z , Zhao K , Pan Q , Long Z-G , Xia J-H *equal contribution (2009) The Transfection Efficiency Improvement of hrDNA Targeting Vectors With NLS Peptide. Progress in Biochemistry and Biophysics, 36, 10, 1283-1290

Yang J, Liu X, Yu J, Sheng L, Shi Y, Li Z, Hu Y, Xue J, Wu L, Liang Y, Xia J, Liang D (2009) A non-viral vector for potential DMD gene therapy study by targeting a minidystrophin-GFP fusion gene into the hrDNA locus. Acta Biochimica et Biophysica Sinica, 41, 12, 1053-1060

Cheng C, Kong X, Wang H, Gan H, Hao Y, Zou W, Wu J, Chi Y, Yang J, Hong Y, Chen K, Gu J (2009) Trihydrophobin 1 Interacts with PAK1 and Regulates ERK/MAPK Activation and Cell Migration. J Biol Chem, 284, 8786-8796

Kong X, Gan H, Hao Y, Cheng C, Jiang J, Hong Y, Yang J, Zhu H, Chi Y, Yun X, Gu J (2009) CDK11p58 phosphorylation of PAK1 Ser174 promotes DLC2 binding and roles on cell cycle progression. J Biochem 146, 417-427